diff options
| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-05-17 21:07:00 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-05-17 21:07:00 +1000 |
| commit | 122395f9fc42de7dbe2643b437ca4e484adb8ba0 (patch) | |
| tree | fe2f22b43e6249cc4e775c518f95ba2fb9705e3d | |
| parent | a9e41d2faf979e1b39e2d587b940a89e071804c2 (diff) | |
gnu: diamond: Update to 0.8.1.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.1.
[source]: Remove 'snippet'.
[build-system]: Use cmake-build-system.
[arguments]: Remove modifications to phases.
[native-inputs]: Remove field.
[inputs]: Remove 'boost'.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 5 insertions, 26 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa16d39861..f882185936 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1482,7 +1482,7 @@ identify enrichments with functional annotations of the genome.") (define-public diamond (package (name "diamond") - (version "0.7.9") + (version "0.8.1") (source (origin (method url-fetch) (uri (string-append @@ -1491,33 +1491,12 @@ identify enrichments with functional annotations of the genome.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "0hfkcfv9f76h5brbyw9fyvmc0l9cmbsxrcdqk0fa9xv82zj47p15")) - (snippet '(begin - (delete-file "bin/diamond") - #t)))) - (build-system gnu-build-system) + "1dqancz32c2l7w1b2vkvh5zqa2jnf99j1c41djnx1l8pxn044zdc")))) + (build-system cmake-build-system) (arguments - '(#:tests? #f ;no "check" target - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'enter-source-dir - (lambda _ - (chdir "src") - #t)) - (delete 'configure) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") - "/bin"))) - (mkdir-p bin) - (copy-file "../bin/diamond" - (string-append bin "/diamond")) - #t)))))) - (native-inputs - `(("bc" ,bc))) + '(#:tests? #f)) ; no "check" target (inputs - `(("boost" ,boost) - ("zlib" ,zlib))) + `(("zlib" ,zlib))) (home-page "https://github.com/bbuchfink/diamond") (synopsis "Accelerated BLAST compatible local sequence aligner") (description |