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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-09-07 12:16:41 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-09-07 12:16:41 +0200 |
| commit | 48e300bd3f83ebab4d689501a7dec88611f2de4b (patch) | |
| tree | ae0387fc8a471877221eafc0c1e3a98b6e8807ab | |
| parent | 2c8e3595e3d3a63dc4c0832025242d35c94b0100 (diff) | |
gnu: Add r-biodb.
* gnu/packages/bioconductor.scm (r-biodb): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 05b6aa118d..e1adb87738 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14074,6 +14074,50 @@ the BiocDockerManager package to install and manage Docker images provided by the Bioconductor project.") (license license:artistic2.0))) +(define-public r-biodb + (package + (name "r-biodb") + (version "1.0.4") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "biodb" version)) + (sha256 + (base32 + "1apnbr5p619nsrhd2drm6arj69sw0wijv8ap7dfrndqkffrpbfmx")))) + (properties `((upstream-name . "biodb"))) + (build-system r-build-system) + (propagated-inputs + `(("r-chk" ,r-chk) + ("r-jsonlite" ,r-jsonlite) + ("r-lgr" ,r-lgr) + ("r-lifecycle" ,r-lifecycle) + ("r-openssl" ,r-openssl) + ("r-plyr" ,r-plyr) + ("r-progress" ,r-progress) + ("r-r6" ,r-r6) + ("r-rappdirs" ,r-rappdirs) + ("r-rcpp" ,r-rcpp) + ("r-rcurl" ,r-rcurl) + ("r-rsqlite" ,r-rsqlite) + ("r-stringr" ,r-stringr) + ("r-testthat" ,r-testthat) + ("r-withr" ,r-withr) + ("r-xml" ,r-xml) + ("r-yaml" ,r-yaml))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/biodb") + (synopsis "Library for connecting to chemical and biological databases") + (description + "The biodb package provides access to standard remote chemical and +biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local +database files (CSV, SQLite), with easy retrieval of entries, access to web +services, search of compounds by mass and/or name, and mass spectra matching +for LCMS and MSMS. Its architecture as a development framework facilitates +the development of new database connectors for local projects or inside +separate published packages.") + (license license:agpl3+))) + (define-public r-tximeta (package (name "r-tximeta") |