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authorzimoun <zimon.toutoune@gmail.com>2020-10-30 15:59:56 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-12-09 12:12:46 +0100
commit53affb349aa0d7d09fa2acedddfb58548f2e0747 (patch)
treef4d2c2baa8573059bbe0e8923100bf230fadbb29
parent86fcceeae1f551ddb9bc692e46245c8291ed3984 (diff)
gnu: r-rhdf5: Update to 2.34.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.34.0. [propagated-inputs]: Add r-rhdf5filters. [arguments]: Avoid to have a plain directory on the list of libraries to link. Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
-rw-r--r--gnu/packages/bioinformatics.scm18
1 files changed, 15 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1438fc3f9b..af42f5f5e6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9105,16 +9105,28 @@ HDF5 datasets.")
(define-public r-rhdf5
(package
(name "r-rhdf5")
- (version "2.32.3")
+ (version "2.34.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "rhdf5" version))
(sha256
(base32
- "0fnx60dpf6s2qwq48lg98g18g8k7wgm66pw0kamlbb7l2hnwycvf"))))
+ "0almr1vscrgj5g4dyrags131wia2pmdbdidlpskbgm44ha6hpmqi"))))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-linking
+ (lambda _
+ (substitute* "src/Makevars"
+ ;; This is to avoid having a plain directory on the list of
+ ;; libraries to link.
+ (("\\(RHDF5_LIBS\\)" match)
+ (string-append match "/libhdf5.a")))
+ #t)))))
(propagated-inputs
- `(("r-rhdf5lib" ,r-rhdf5lib)))
+ `(("r-rhdf5filters" ,r-rhdf5filters)
+ ("r-rhdf5lib" ,r-rhdf5lib)))
(inputs
`(("zlib" ,zlib)))
(native-inputs