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authorRicardo Wurmus <rekado@elephly.net>2019-04-03 17:07:08 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-04-03 17:42:18 +0200
commit5622628fd1a6e849b9ccebc37a944d892acb4c51 (patch)
tree61dfbb0aabc299ccbd3ab25f4c9767ea97b8b235
parent2bdc88fce75495496f1d7af65f1cadd1e5f51a66 (diff)
gnu: Add r-progeny.
* gnu/packages/bioconductor.scm (r-progeny): New variable.
-rw-r--r--gnu/packages/bioconductor.scm22
1 files changed, 22 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 823282397c..d033258d17 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4202,3 +4202,25 @@ This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID
sequencing reads aligner and @code{AdapterRemoval}, a convenient tool for
rapid adapter trimming, identification, and read merging.")
(license license:gpl3+)))
+
+(define-public r-progeny
+ (package
+ (name "r-progeny")
+ (version "1.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "progeny" version))
+ (sha256
+ (base32
+ "02z09rbzi305jrwzai8zayxi82563lxcaldp4r9pw564qkbl7pk7"))))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-biobase" ,r-biobase)))
+ (home-page "https://github.com/saezlab/progeny")
+ (synopsis "Pathway responsive gene activity inference")
+ (description
+ "This package provides a function to infer pathway activity from gene
+expression. It contains the linear model inferred in the publication
+\"Perturbation-response genes reveal signaling footprints in cancer gene
+expression\".")
+ (license license:asl2.0)))