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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-10-21 11:47:19 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-10-21 12:23:25 +0000 |
| commit | 57841a91f5917fdf3166c1751abaa2e7beab257f (patch) | |
| tree | 06d75f58e0e71e88468fed1b80c8e493be97c0db | |
| parent | 6526c35df5d96a3020fdad8bbe4240ca8b2954ee (diff) | |
gnu: Add python-bwapy.
* gnu/packages/bioinformatics.scm (python-bwapy): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index afbacc1c83..139eb3434a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -106,6 +106,7 @@ #:use-module (gnu packages java-compression) #:use-module (gnu packages jemalloc) #:use-module (gnu packages jupyter) + #:use-module (gnu packages libffi) #:use-module (gnu packages linux) #:use-module (gnu packages logging) #:use-module (gnu packages lsof) @@ -15112,6 +15113,31 @@ the @dfn{partial order alignment} (POA) algorithm (as described in sequences") (license license:expat))) +(define-public python-bwapy + (package + (name "python-bwapy") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "bwapy" version)) + (sha256 + (base32 "090qwx3vl729zn3a7sksbviyg04kc71gpbm3nd8dalqp673x1npw")))) + (build-system python-build-system) + (propagated-inputs + `(("python-cffi" ,python-cffi) + ("python-setuptools" ,python-setuptools) + ("python-wheel" ,python-wheel))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/ACEnglish/bwapy") + (synopsis "Python bindings to bwa alinger") + (description "This package provides Python bindings to the bwa mem +aligner.") + ;; These Python bindings are licensed under Mozilla Public License 2.0, + ;; bwa itself is licenced under GNU General Public License v3.0. + (license license:mpl2.0))) + (define-public scregseg (package (name "scregseg") |