diff options
| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-01-27 16:05:17 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-01-27 19:12:07 +0100 |
| commit | 5ebbedea5803fcee3d99eb15bacca838bf4c124d (patch) | |
| tree | 8d264b3c7363cffb4857329114639f8e48169d80 | |
| parent | dbf965dd7b76dfa50ee80e037a7404e163b9917c (diff) | |
gnu: Add r-castor.
* gnu/packages/cran.scm (r-castor): New variable.
| -rw-r--r-- | gnu/packages/cran.scm | 29 |
1 files changed, 28 insertions, 1 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index dce349890a..7ca7ab0f9a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -35,7 +35,7 @@ ;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com> ;;; Copyright © 2021 Marcel Schilling <marcel.schilling@uni-luebeck.de> ;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net> -;;; Copyright © 2022 Navid Afkhami <navid.afkhami@mdc-berlin.de> +;;; Copyright © 2022, 2023 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; Copyright © 2022 Greg Hogan <code@greghogan.com> ;;; ;;; This file is part of GNU Guix. @@ -256,6 +256,33 @@ can limit either their total size or the age of the oldest object (or both), automatically pruning objects to maintain the constraints.") (license license:expat))) +(define-public r-castor + (package + (name "r-castor") + (version "1.7.6") + (source (origin + (method url-fetch) + (uri (cran-uri "castor" version)) + (sha256 + (base32 + "1qbndwmzzpkzgiah0hgid9z5f9iv2j53d515bjcci1591gx1fk36")))) + (properties `((upstream-name . "castor"))) + (build-system r-build-system) + (propagated-inputs (list r-matrix r-naturalsort r-rcpp r-rspectra)) + (home-page "https://cran.r-project.org/package=castor") + (synopsis "Efficient phylogenetics on large trees") + (description + "This tool supports analyses on massive phylogenies comprising up to +millions of tips. Functions include pruning, rerooting, calculation of +most-recent common ancestors, calculating distances from the tree root and +calculating pairwise distances. In addition, this tool takes care of +calculation of phylogenetic signal and mean trait depth (trait conservatism), +ancestral state reconstruction and hidden character prediction of discrete +characters, simulating and fitting models of trait evolution, fitting and +simulating diversification models, dating trees, comparing trees, and +reading/writing trees in Newick format.") + (license license:gpl2+))) + (define-public r-collections (package (name "r-collections") |