diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2020-06-13 00:28:45 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-06-13 01:19:50 +0200 |
| commit | 6e2dc9e3858eb6a99cb599f6f9785c62fe867438 (patch) | |
| tree | a95c0d09e37922fe62e581fa5fa11f410e4fb67d | |
| parent | 1e37caca523dae739d72bee4d5130a29f1979653 (diff) | |
gnu: r-karyoploter: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.14.0.
[propagated-inputs]: Add r-genomicfeatures.
[native-inputs]: Add r-knitr.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 23 |
1 files changed, 13 insertions, 10 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1988de309c..3884b72738 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2701,29 +2701,32 @@ gene and isoform level using RNA-seq data") (define-public r-karyoploter (package (name "r-karyoploter") - (version "1.12.4") + (version "1.14.0") (source (origin (method url-fetch) (uri (bioconductor-uri "karyoploteR" version)) (sha256 (base32 - "03jmfgmw35hrgn3pc5lq6pblzhfx9fp4l6dx50rp303lr7kjxp9v")))) + "0h0gk4xd95k5phy6qcsv7j931d7gk3p24i2fg4mz5dsk110lpifs")))) (build-system r-build-system) (propagated-inputs - `(("r-regioner" ,r-regioner) + `(("r-annotationdbi" ,r-annotationdbi) + ("r-bamsignals" ,r-bamsignals) + ("r-bezier" ,r-bezier) + ("r-biovizbase" ,r-biovizbase) + ("r-digest" ,r-digest) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) ("r-genomicranges" ,r-genomicranges) ("r-iranges" ,r-iranges) - ("r-rsamtools" ,r-rsamtools) ("r-memoise" ,r-memoise) + ("r-regioner" ,r-regioner) + ("r-rsamtools" ,r-rsamtools) ("r-rtracklayer" ,r-rtracklayer) - ("r-genomeinfodb" ,r-genomeinfodb) ("r-s4vectors" ,r-s4vectors) - ("r-biovizbase" ,r-biovizbase) - ("r-digest" ,r-digest) - ("r-bezier" ,r-bezier) - ("r-bamsignals" ,r-bamsignals) - ("r-annotationdbi" ,r-annotationdbi) ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://bioconductor.org/packages/karyoploteR/") (synopsis "Plot customizable linear genomes displaying arbitrary data") (description "This package creates karyotype plots of arbitrary genomes and |