diff options
| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-04-11 16:03:35 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-04-14 14:53:17 +0200 |
| commit | b0dd06bd0caea46a852248ab48ab2e6aaff57752 (patch) | |
| tree | 5f05d589ddfa0ce14a1b98eb106413e76510adad | |
| parent | 16372cb347f071b398285678ab2634d71c897954 (diff) | |
gnu: Add r-xcir.
* gnu/packages/bioconductor.scm (r-xcir): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioconductor.scm | 39 |
1 files changed, 38 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2fa64c4b0b..bec3496057 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7,7 +7,7 @@ ;;; Copyright © 2017, 2018, 2019, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019, 2020, 2021, 2022 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com> -;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> +;;; Copyright © 2020, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de> ;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com> @@ -5191,6 +5191,43 @@ their variance is independent of the mean, and they are usually more sensitive and specific in detecting differential transcription.") (license license:artistic2.0))) +;; There is no source tarball, so we fetch the code from the Bioconductor git +;; repository. +(define-public r-xcir + (let ((commit "3b59d456f2ad7f70285915b036b1dc4279687277") + (revision "1")) + (package + (name "r-xcir") + (version (git-version "1.8.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://git.bioconductor.org/packages/XCIR") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1xxw5ady5j2p7z7zjxgx7lhm85x7fxbljiv49lc2ghsvh9wm937p")))) + (properties `((upstream-name . "XCIR"))) + (build-system r-build-system) + (propagated-inputs (list r-biomart + r-biostrings + r-data-table + r-ggplot2 + r-iranges + r-readxl + r-s4vectors + r-seqminer + r-variantannotation)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/SRenan/XCIR") + (synopsis "Analysis of X chromosome inactivation") + (description + "This package is an R package that offers models and tools for subject +level analysis of @dfn{X chromosome inactivation} (XCI) and XCI-escape +inference.") + (license license:gpl2)))) + (define-public r-xina (package (name "r-xina") |