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authorzimoun <zimon.toutoune@gmail.com>2021-05-21 22:26:08 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-05-31 15:38:00 +0200
commitc2a18aee16a59330a005bf6818df733a2f56c425 (patch)
tree8bb96dc9be2048a1eed0e748795387dca9e41fa3
parent621aa3b442341c81305d2d56835203ff517a7bb9 (diff)
gnu: r-motifrg: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-motifrg): Move from here... * gnu/packages/bioconductor.scm (r-motifrg): ...to here.
-rw-r--r--gnu/packages/bioconductor.scm27
-rw-r--r--gnu/packages/bioinformatics.scm27
2 files changed, 27 insertions, 27 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a4d99dd929..c9f72c5492 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3129,6 +3129,33 @@ and the assessment of differential expression. The analysis methods apply to
different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(license license:gpl2+)))
+(define-public r-motifrg
+ (package
+ (name "r-motifrg")
+ (version "1.31.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "motifRG" version))
+ (sha256
+ (base32
+ "1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
+ (properties `((upstream-name . "motifRG")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
+ ("r-iranges" ,r-iranges)
+ ("r-seqlogo" ,r-seqlogo)
+ ("r-xvector" ,r-xvector)))
+ (home-page "https://bioconductor.org/packages/motifRG")
+ (synopsis "Discover motifs in high throughput sequencing data")
+ (description
+ "This package provides tools for discriminative motif discovery in high
+throughput genetic sequencing data sets using regression methods.")
+ (license license:artistic2.0)))
+
(define-public r-msnbase
(package
(name "r-msnbase")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cb0fe505cb..8f011f0c78 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8046,33 +8046,6 @@ plots the corresponding sequence logo as introduced by Schneider and
Stephens (1990).")
(license license:lgpl2.0+)))
-(define-public r-motifrg
- (package
- (name "r-motifrg")
- (version "1.31.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "motifRG" version))
- (sha256
- (base32
- "1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
- (properties `((upstream-name . "motifRG")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biostrings" ,r-biostrings)
- ("r-bsgenome" ,r-bsgenome)
- ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
- ("r-iranges" ,r-iranges)
- ("r-seqlogo" ,r-seqlogo)
- ("r-xvector" ,r-xvector)))
- (home-page "https://bioconductor.org/packages/motifRG")
- (synopsis "Discover motifs in high throughput sequencing data")
- (description
- "This package provides tools for discriminative motif discovery in high
-throughput genetic sequencing data sets using regression methods.")
- (license license:artistic2.0)))
-
(define-public r-zlibbioc
(package
(name "r-zlibbioc")