diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2020-06-13 00:51:07 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-06-13 01:19:54 +0200 |
| commit | e65783e032f6a97e846493f3119985b6a10dd7b5 (patch) | |
| tree | 6f4dd833515ac71b82a0e2f201e1f3710ca95c3b | |
| parent | da6a75fe0032e1485db36aac4762223a0e170e1f (diff) | |
gnu: r-motifbreakr: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.2.0.
[propagated-inputs]: Add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 17 insertions, 14 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c638749a04..b36465ca75 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4236,32 +4236,35 @@ frequency matrices from nine public sources, for multiple organisms.") (define-public r-motifbreakr (package (name "r-motifbreakr") - (version "2.0.0") + (version "2.2.0") (source (origin (method url-fetch) (uri (bioconductor-uri "motifbreakR" version)) (sha256 - (base32 "190z8gj393qdpq5wz7gph96k0l8c1j9wd0p0llscysvk5kr1hf9n")))) + (base32 "09czgmyjcycsvyvadpjddwwvqvxzd0ba3zhczh4mqc09gwa6vhlm")))) (properties `((upstream-name . "motifbreakR"))) (build-system r-build-system) (propagated-inputs - `(("r-grimport" ,r-grimport) - ("r-stringr" ,r-stringr) - ("r-biocgenerics" ,r-biocgenerics) - ("r-s4vectors" ,r-s4vectors) - ("r-iranges" ,r-iranges) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicranges" ,r-genomicranges) + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) ("r-biostrings" ,r-biostrings) ("r-bsgenome" ,r-bsgenome) - ("r-rtracklayer" ,r-rtracklayer) - ("r-variantannotation" ,r-variantannotation) - ("r-biocparallel" ,r-biocparallel) - ("r-motifstack" ,r-motifstack) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-grimport" ,r-grimport) ("r-gviz" ,r-gviz) + ("r-iranges" ,r-iranges) ("r-matrixstats" ,r-matrixstats) + ("r-motifdb" ,r-motifdb) + ("r-motifstack" ,r-motifstack) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-stringr" ,r-stringr) + ("r-summarizedexperiment" ,r-summarizedexperiment) ("r-tfmpvalue" ,r-tfmpvalue) - ("r-motifdb" ,r-motifdb))) + ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://www.bioconductor.org/packages/motifbreakR/") (synopsis "Predicting disruptiveness of single nucleotide polymorphisms") (description "This package allows biologists to judge in the first place |