summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2019-12-04 09:34:13 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-12-04 09:34:13 +0100
commitc271d9902553771119c292a92caffe06253c895f (patch)
tree35d549d5f66759292b8cee57ee84e743965de604
parent1afdf41b4984dfe09807583a0ee38bdff3579fa2 (diff)
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
-rw-r--r--gnu/packages/bioconductor.scm11
1 files changed, 2 insertions, 9 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 42a3f7bb23..262618cf9e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -573,21 +573,14 @@ database is exposed as a @code{TxDb} object.")
(version "3.4.7")
(source (origin
(method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "TxDb.Mmusculus.UCSC.mm10.knownGene_"
- version ".tar.gz"))
+ (uri (bioconductor-uri "TxDb.Mmusculus.UCSC.mm10.knownGene"
+ version 'annotation))
(sha256
(base32
"04impkl8zh1gpwwrpbf19jqznsjrq2306yyhm6cmx6hr1401bd6b"))))
(properties
`((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene")))
(build-system r-build-system)
- ;; As this package provides little more than a very large data file it
- ;; doesn't make sense to build substitutes.
- (arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)
("r-genomicfeatures" ,r-genomicfeatures)