summaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
diff options
context:
space:
mode:
authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-12-08 20:22:32 +0100
committerRicardo Wurmus <rekado@elephly.net>2022-12-12 18:41:13 +0100
commitb9014985beb92d040b7da195353b405c7c768378 (patch)
treef68187a24d289d3523507e559b2e5293a115116d /gnu/packages/bioconductor.scm
parent061ce5500abcaaf67c9e0cf09f8a881525a4fdef (diff)
gnu: Add r-asics.
* gnu/packages/bioconductor.scm (r-asics): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm34
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1ceee9d77d..ec1bbb99d1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2857,6 +2857,40 @@ biological knowledge. Genes, and clinical pathways are incorporated in the
model as latent variables.")
(license license:gpl3)))
+(define-public r-asics
+ (package
+ (name "r-asics")
+ (version "2.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ASICS" version))
+ (sha256
+ (base32
+ "0c2b3gdza58vqhharhw8967p2w2knnrm5s2svvnnjbf67qbg45b7"))))
+ (properties `((upstream-name . "ASICS")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocparallel
+ r-ggplot2
+ r-glmnet
+ r-gridextra
+ r-matrix
+ r-mvtnorm
+ r-pepsnmr
+ r-plyr
+ r-quadprog
+ r-ropls
+ r-summarizedexperiment
+ r-zoo))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/ASICS")
+ (synopsis "Automatic statistical identification in complex spectra")
+ (description
+ "ASICS quantifies concentration of metabolites in a complex spectrum.
+The identification of metabolites is performed by fitting a mixture model to
+the spectra of the library with a sparse penalty.")
+ (license license:gpl2+)))
+
(define-public r-aspli
(package
(name "r-aspli")