diff options
author | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 15:47:46 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 23:32:43 +0100 |
commit | 421c68e3f7e0753fc49af9a3904f94405b5629eb (patch) | |
tree | 5ea06499714eb631eea9e83f1f663cd11398b2bc /gnu/packages/bioinformatics.scm | |
parent | b52a866d149112134fa4c314968a795fe73533b1 (diff) |
gnu: Add r-homo-sapiens.
* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b58764c6c9..4f26e37210 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9881,6 +9881,38 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.") on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) +(define-public r-homo-sapiens + (package + (name "r-homo-sapiens") + (version "1.3.1") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "http://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "Homo.sapiens_" + version ".tar.gz")) + (sha256 + (base32 + "151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01")))) + (properties + `((upstream-name . "Homo.sapiens"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomicfeatures" ,r-genomicfeatures) + ("r-go-db" ,r-go-db) + ("r-org-hs-eg-db" ,r-org-hs-eg-db) + ("r-txdb-hsapiens-ucsc-hg19-knowngene" ,r-txdb-hsapiens-ucsc-hg19-knowngene) + ("r-organismdbi" ,r-organismdbi) + ("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://bioconductor.org/packages/Homo.sapiens/") + (synopsis "Annotation package for the Homo.sapiens object") + (description + "This package contains the Homo.sapiens object to access data from +several related annotation packages.") + (license license:artistic2.0))) + (define-public r-qvalue (package (name "r-qvalue") |