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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 15:47:46 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:43 +0100
commit421c68e3f7e0753fc49af9a3904f94405b5629eb (patch)
tree5ea06499714eb631eea9e83f1f663cd11398b2bc /gnu/packages/bioinformatics.scm
parentb52a866d149112134fa4c314968a795fe73533b1 (diff)
gnu: Add r-homo-sapiens.
* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b58764c6c9..4f26e37210 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9881,6 +9881,38 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.")
on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
+(define-public r-homo-sapiens
+ (package
+ (name "r-homo-sapiens")
+ (version "1.3.1")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "Homo.sapiens_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"))))
+ (properties
+ `((upstream-name . "Homo.sapiens")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-go-db" ,r-go-db)
+ ("r-org-hs-eg-db" ,r-org-hs-eg-db)
+ ("r-txdb-hsapiens-ucsc-hg19-knowngene" ,r-txdb-hsapiens-ucsc-hg19-knowngene)
+ ("r-organismdbi" ,r-organismdbi)
+ ("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://bioconductor.org/packages/Homo.sapiens/")
+ (synopsis "Annotation package for the Homo.sapiens object")
+ (description
+ "This package contains the Homo.sapiens object to access data from
+several related annotation packages.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")