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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:33:17 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:33:17 +0100
commit7bc5d1b0e1f1265028f221a51d7ee1c526132f65 (patch)
tree86a63c5a3cf9953c268946342a6f89d321f873db /gnu/packages/bioinformatics.scm
parent13dabd6947c61789c231de96be1fb7a8116db0cd (diff)
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Move from here... * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm35
1 files changed, 0 insertions, 35 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d45dedb6c9..b9973ba81f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8105,41 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and
Stephens (1990).")
(license license:lgpl2.0+)))
-(define-public r-txdb-mmusculus-ucsc-mm10-knowngene
- (package
- (name "r-txdb-mmusculus-ucsc-mm10-knowngene")
- (version "3.4.4")
- (source (origin
- (method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "TxDb.Mmusculus.UCSC.mm10.knownGene_"
- version ".tar.gz"))
- (sha256
- (base32
- "01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"))))
- (properties
- `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene")))
- (build-system r-build-system)
- ;; As this package provides little more than a very large data file it
- ;; doesn't make sense to build substitutes.
- (arguments `(#:substitutable? #f))
- (propagated-inputs
- `(("r-bsgenome" ,r-bsgenome)
- ("r-genomicfeatures" ,r-genomicfeatures)
- ("r-annotationdbi" ,r-annotationdbi)))
- (home-page
- "https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/")
- (synopsis "Annotation package for TxDb knownGene object(s) for Mouse")
- (description
- "This package loads a TxDb object, which is an R interface to
-prefabricated databases contained in this package. This package provides
-the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
-based on the knownGene track.")
- (license license:artistic2.0)))
-
(define-public r-motifrg
(package
(name "r-motifrg")