diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2019-06-20 14:02:27 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-06-20 14:33:57 +0200 |
| commit | 7cb44fb5718c748a80e05a673f9b5faaa7586137 (patch) | |
| tree | a58d7d7ab490f4aa7d2741429b9e94905592c2e6 /gnu/packages/bioinformatics.scm | |
| parent | b46a9b9a5e833989396565c9d924cc97ce080703 (diff) | |
gnu: ncbi-vdb: Update to 2.9.6.
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6.
[arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags".
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 10 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8002f24110..2862cb1187 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5582,7 +5582,7 @@ simultaneously.") (define-public ncbi-vdb (package (name "ncbi-vdb") - (version "2.9.3") + (version "2.9.6") (source (origin (method git-fetch) (uri (git-reference @@ -5591,11 +5591,12 @@ simultaneously.") (file-name (git-file-name name version)) (sha256 (base32 - "1l4ny67nxwv1lagk9wwjbrgm7ln7adci6dnpc7k1yaln6shj0qpm")))) + "0knkj1sq34hlivgv5qd6jlczqrs3ldmfgn6vbbw7p4mqxvb9mirk")))) (build-system gnu-build-system) (arguments `(#:parallel-build? #f ; not supported #:tests? #f ; no "check" target + #:make-flags '("HAVE_HDF5=1") #:phases (modify-phases %standard-phases (add-after 'unpack 'make-files-writable @@ -5607,6 +5608,13 @@ simultaneously.") (string-append (getcwd) "/setup:" (getenv "PERL5LIB"))) #t)) + ;; See https://github.com/ncbi/ncbi-vdb/issues/14 + (add-after 'unpack 'patch-krypto-flags + (lambda _ + (substitute* "libs/krypto/Makefile" + (("-Wa,-march=generic64\\+aes") "") + (("-Wa,-march=generic64\\+sse4") "")) + #t)) (replace 'configure (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) |