diff options
| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2019-07-15 12:13:42 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-07-15 12:18:01 +0200 |
| commit | 886986b744f9bbf0d27c365a0e466a7f21d004f8 (patch) | |
| tree | d2d4dc4bae36ab33917b5705a385ee240efa7527 /gnu/packages/bioinformatics.scm | |
| parent | d71d85cd17ea86d902f6d8109e43134138640a90 (diff) | |
gnu: Add python-ont-fast5-api.
* gnu/packages/bioinformatics.scm (python-ont-fast5-api): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9535678ccf..d72fde00b4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14754,6 +14754,35 @@ vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots are generated using @code{ggplot2}.") (license license:expat))) +(define-public python-ont-fast5-api + (package + (name "python-ont-fast5-api") + (version "1.4.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/nanoporetech/ont_fast5_api.git") + (commit (string-append "release_" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "03cbq4zbbwhll8ml2m9k8sa31mirsvcbjkrq1yna0kkzz9fad5fm")))) + (build-system python-build-system) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-six" ,python-six) + ("python-h5py" ,python-h5py) + ("python-progressbar33" ,python-progressbar33))) + (home-page "https://github.com/nanoporetech/ont_fast5_api") + (synopsis "Interface to HDF5 files of the Oxford Nanopore fast5 file format") + (description + "This package provides a concrete implementation of the fast5 file schema +using the generic @code{h5py} library, plain-named methods to interact with +and reflect the fast5 file schema, and tools to convert between +@code{multi_read} and @code{single_read} formats.") + (license license:mpl2.0))) + (define-public tbsp (let ((commit "ec8fff4410cfb13a677dbbb95cbbc60217e64907") (revision "1")) |