summaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2018-10-20 22:22:28 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-10-20 23:37:34 +0200
commitf45093429c8319475b22c5478ea6b719b7c97cb8 (patch)
tree0783e76aa006184d3796fa8d467c5e864e9c0250 /gnu/packages/bioinformatics.scm
parentf8b697a3855adbf583fedd970fe8bc3ab5a8d3f1 (diff)
gnu: blast+: Use INVOKE and return #T unconditionally.
* gnu/packages/bioinformatics.scm (blast+)[arguments]: Use INVOKE and return #T unconditionally.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm59
1 files changed, 28 insertions, 31 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a77eaead7e..66e06869c4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1071,15 +1071,12 @@ package provides command line tools using the Bio++ library.")
#:parallel-build? #f ; not supported
#:phases
(modify-phases %standard-phases
- (add-before
- 'configure 'set-HOME
+ (add-before 'configure 'set-HOME
;; $HOME needs to be set at some point during the configure phase
(lambda _ (setenv "HOME" "/tmp") #t))
- (add-after
- 'unpack 'enter-dir
+ (add-after 'unpack 'enter-dir
(lambda _ (chdir "c++") #t))
- (add-after
- 'enter-dir 'fix-build-system
+ (add-after 'enter-dir 'fix-build-system
(lambda _
(define (which* cmd)
(cond ((string=? cmd "date")
@@ -1127,31 +1124,31 @@ package provides command line tools using the Bio++ library.")
(("action=/bin/") "action=")
(("export PATH") ":"))
#t))
- (replace
- 'configure
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out"))
- (lib (string-append (assoc-ref outputs "lib") "/lib"))
- (include (string-append (assoc-ref outputs "include")
- "/include/ncbi-tools++")))
- ;; The 'configure' script doesn't recognize things like
- ;; '--enable-fast-install'.
- (zero? (system* "./configure.orig"
- (string-append "--with-build-root=" (getcwd) "/build")
- (string-append "--prefix=" out)
- (string-append "--libdir=" lib)
- (string-append "--includedir=" include)
- (string-append "--with-bz2="
- (assoc-ref inputs "bzip2"))
- (string-append "--with-z="
- (assoc-ref inputs "zlib"))
- (string-append "--with-pcre="
- (assoc-ref inputs "pcre"))
- ;; Each library is built twice by default, once
- ;; with "-static" in its name, and again
- ;; without.
- "--without-static"
- "--with-dll"))))))))
+ (replace 'configure
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (lib (string-append (assoc-ref outputs "lib") "/lib"))
+ (include (string-append (assoc-ref outputs "include")
+ "/include/ncbi-tools++")))
+ ;; The 'configure' script doesn't recognize things like
+ ;; '--enable-fast-install'.
+ (invoke "./configure.orig"
+ (string-append "--with-build-root=" (getcwd) "/build")
+ (string-append "--prefix=" out)
+ (string-append "--libdir=" lib)
+ (string-append "--includedir=" include)
+ (string-append "--with-bz2="
+ (assoc-ref inputs "bzip2"))
+ (string-append "--with-z="
+ (assoc-ref inputs "zlib"))
+ (string-append "--with-pcre="
+ (assoc-ref inputs "pcre"))
+ ;; Each library is built twice by default, once
+ ;; with "-static" in its name, and again
+ ;; without.
+ "--without-static"
+ "--with-dll")
+ #t))))))
(outputs '("out" ; 21 MB
"lib" ; 226 MB
"include")) ; 33 MB