gnu: julia: Update to 1.8.3.

* gnu/packages/julia.scm (julia): Update to 1.8.3.
[source]: Remove one patch.
[arguments]: Adjust 'prepare-deps phase to changes in inputs. Remove
custom 'use-system-libwhich, 'change-number-of-precompiled-statements,
'symlink-libraries phases. In 'fix-include-and-link-paths phase remove
substitution for utf8proc linking and adjust libuv linking. Fix
reference to shell in 'replace-default-shell phase. Adjust the
'shared-objects-path phase to changes in the source. Change the
'enable-parallel-tests phase for upstream changes. Adjust the
'adjust-test-suite phase to be more robust. Change the
'disable-broken-tests phase to help the test suite pass. Rename
'symlink-llvm-utf8proc phase to 'symlink-missing-libraries and add two
more. Adjust make-flags for changes in shared system libraries. Reorder
make-flags to changes in the source. Except for aarch64, use the
defaults for choosing to use 64-bit blas.
[inputs]: Add libblastrampoline. Replace libgit-1.1 with libgit-1.3,
utf8proc-2.7.1 with utf8proc-2.8.0.
[native-inputs]: Replace python-2 with python.
(libunwind-julia): Update to 1.5.0.
[source]: Update patches.
* gnu/packages/libevent.scm (libuv-julia): Update to 2.0.0-4.e6f0e49.
[arguments]: Also build static library, build position-independent-code.
* gnu/packages/llvm.scm (llvm-julia): Update to llvm-13, following
upstream's build instructions.
* gnu/packages/maths.scm (openlibm): Update to 0.8.1.
* gnu/packages/textutils.scm (utf8proc-2.7.1): Update and rename to
utf8proc-2.8.0.
[native-inputs]: Update unicode to 14.0.0.
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.28.0.
[source]: Remove snippet.
[arguments]: Remove trailing #t from phases.
* gnu/packages/patches/julia-allow-parallel-build.patch,
(julia-patch): Update version string to 1.8.2.
gnu/packages/patches/libunwind-julia-fix-GCC10-fno-common.patch: Remove
files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Co-authored-by: Akira Kyle <akira@akirakyle.com>

1 files changed, 13 insertions, 120 deletions

diff --git a/gnu/packages/llvm.scm b/gnu/packages/llvm.scm
index 9ffdf8761b..7de7177b77 100644
--- a/gnu/packages/llvm.scm
+++ b/gnu/packages/llvm.scm
@@ -62,7 +62,6 @@
   #:use-module (gnu packages bootstrap)           ;glibc-dynamic-linker
   #:use-module (gnu packages check)               ;python-lit
   #:use-module (gnu packages compression)
-  #:use-module (gnu packages julia)               ;julia-patch
   #:use-module (gnu packages libedit)
   #:use-module (gnu packages libffi)
   #:use-module (gnu packages lua)
@@ -2100,126 +2099,20 @@ LLVM."))))
 
 (define-public llvm-julia
   (package
-    (inherit llvm-11)
-    (name "llvm-julia")
-    (properties `((hidden? . #t)
-                  ,@(package-properties llvm-11)))
-    (source (origin
-              (inherit (package-source llvm-11))
-              ;; Those patches are inside the Julia source repo.
-              ;; They are _not_ Julia specific (https://github.com/julialang/julia#llvm)
-              ;; but they are required to build Julia.
-              ;; Discussion: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=919628
-              (patches
-               (map (match-lambda
-                      ((name hash)
-                       (julia-patch name hash)))
-                    (list
-                     '("llvm-D27629-AArch64-large_model_6.0.1"
-                       "1qrshmlqvnasdyc158vfn3hnbigqph3lsq7acb9w8lwkpnnm2j4z")
-                     '("llvm8-D34078-vectorize-fdiv"
-                       "19spqc3xsazn1xs9gpcgv9ldadfkv49rmc5khl7sf1dlmhgi4602")
-                     '("llvm-7.0-D44650"
-                       "1h55kkmkiisfj6sk956if2bcj9s0v6n5czn8dxb870vp5nccj3ir")
-                     '("llvm7-symver-jlprefix"
-                       "00ng32x6xhm9czczirn5r1q1mc1myad44fqhi061hwh1vb46dwgm")
-                     '("llvm-6.0-DISABLE_ABI_CHECKS"
-                       "014fawd1ba7yckalypfld22zgic87x9nx3cim42zrwygywd36pyg")
-                     '("llvm9-D50010-VNCoercion-ni"
-                       "1s1d3sjsiq4vxg7ncy5cz56zgy5vcq6ls3iqaiqkvr23wyryqmdx")
-                     '("llvm7-revert-D44485"
-                       "0f59kq3p3mpwsbmskypbi4zn01l6ig0x7v2rjp08k2r8z8m6fa8n")
-                     '("llvm-11-D75072-SCEV-add-type"
-                       "176xi1lnbnv2rcs05ywhyb7pd0xgmibayvwzksksg44wg2dh8mbx")
-                     '("llvm-julia-tsan-custom-as"
-                       "0awh40kf6lm4wn1nsjd1bmhfwq7rqj811szanp2xkpspykw9hg9s")
-                     '("llvm-D80101"
-                       "1gsdwmgmpbignvqyxcnlprj899259p3dvdznlncd84ss445qgq3j")
-                     '("llvm-D84031"
-                       "0nks9sbk7p0r5gyr0idrmm93a5fmdai8kihz9532dx4zhcvvqbjc")
-                     '("llvm-10-D85553"
-                       "1zjq7j9q2qp56hwkc8yc8f0z7kvam3j7hj8sb7qyd77r255ff78l")
-                     '("llvm-10-unique_function_clang-sa"
-                       "1jys9w2zqk3dasnxqh0qz5ij7rxi6mkgq9pqjsclmamr5169zyan")
-                     ;'("llvm-D88630-clang-cmake"
-                     ;  "0rs6s71nqnjkny7i69gqazhqj5jqfdr0bkxs2v5a55sfx8fa1k54")
-                     '("llvm-11-D85313-debuginfo-empty-arange"
-                       "1f672d5385xpgb8yrim8d3b7wg2z1l81agnshm1q61kdvjixqx32")
-                     '("llvm-11-D90722-rtdyld-absolute-relocs"
-                       "0kmnai229yyxkmpk9lxd180mcnhk2i8d87k2sg89gc8as18w10r6")
-                     '("llvm-invalid-addrspacecast-sink"
-                       "1n1b7j4s80vj7x5377aj9vyphmxx1q6bm0chhkxp6zsy3mx3g2ry")
-                     '("llvm-11-D92906-ppc-setjmp"
-                       "0cmd4dsblp7a8m03j16dqxws0ijh55zf4jzzxmj341qxa1gamdp9")
-                     '("llvm-11-PR48458-X86ISelDAGToDAG"
-                       "0vwzvlhsdazhxg4gj8g2f00a4f8qc5cgac23w575xk3pgba1jh6y")
-                     '("llvm-11-D93092-ppc-knownbits"
-                       "1748bypsc7c9lbs3fnkv0kwvch6bn85kj98j4jdaz254ig0wa6xj")
-                     '("llvm-11-D93154-globalisel-as"
-                       "1k5wd4z3pa7zj0gyjkif7viqj906dhqlbb7dc95gig40nbxv6zpj")
-                     '("llvm-11-ppc-half-ctr"
-                       "0piywisfz6cmw3133kz7vzhiqflq2y7igakqxlym0gi8pqylv7w9")
-                     '("llvm-11-ppc-sp-from-bp"
-                       "1wmg3485cx5f9pbykyl3jibk1wwv4w1x30hl4jyfndzr2yh8azf9")
-                     '("llvm-rGb498303066a6-gcc11-header-fix"
-                       "0hkd4rwhvh8g2yh13g29wiwnjpv2yd1hdyiv1ryw8izl25bz9c67")
-                     '("llvm-11-D94813-mergeicmps"
-                       "0cmy0ywkgyrdcvr9bd6pd912lyd4gcsrib4z0v05dwgcdxhk7y29")
-                     '("llvm-11-D94980-CTR-half"
-                       "1yf8cxib3z8hz7zi9n6v2g2c6vpfr4slq9hpx8m8yq8f1jbyw3fw")
-                     '("llvm-11-D94058-sext-atomic-ops"
-                       "1x6p6k6q651z5jcqxx8vj17cxnv196mka7mwn7dpp6c23lwgfdpb")
-                     '("llvm-11-D96283-dagcombine-half"
-                       "0lv4iq2f8qrcz1xyxfic3bcr5p0aqam3a7c6pp6fnw3riixm096k"))))
-              (patch-flags '("-p1"))))
+    (inherit llvm-13)
     (arguments
-     (substitute-keyword-arguments (package-arguments llvm-11)
-       ((#:phases phases)
-        `(modify-phases ,phases
-           (add-after 'unpack 'patch-round-two
-             ;; We have to do the patching in two rounds because we can't
-             ;; pass '-p1' and '-p2' in the source field.
-             (lambda* (#:key inputs #:allow-other-keys)
-               (map (lambda (patchname)
-                      (invoke "patch" patchname "-p2"))
-                    (list "llvm-11-AArch64-FastIsel-bug"
-                          "llvm-11-D97435-AArch64-movaddrreg"
-                          "llvm-11-D97571-AArch64-loh"
-                          "llvm-11-aarch64-addrspace"))))))
-       ((#:build-type _) "Release")
-       ((#:configure-flags flags)
-        `(list
-           ;; Build a native compiler and the NVPTX backend (NVIDIA) since
-           ;; Julia insists on it, nothing more.  This reduces build times and
-           ;; disk usage.
-           ,(string-append "-DLLVM_TARGETS_TO_BUILD=" (system->llvm-target))
-           "-DLLVM_EXPERIMENTAL_TARGETS_TO_BUILD=NVPTX"
-
-           "-DLLVM_INSTALL_UTILS=ON"
-           "-DLLVM_BUILD_TESTS=ON"
-           "-DLLVM_ENABLE_FFI=ON"
-           "-DLLVM_ENABLE_RTTI=ON"
-           ;; "-DLLVM_HOST_TRIPLE=${stdenv.hostPlatform.config}"
-           ;; "-DLLVM_DEFAULT_TARGET_TRIPLE=${stdenv.hostPlatform.config}"
-           ;; "-DLLVM_EXPERIMENTAL_TARGETS_TO_BUILD=WebAssembly"
-           "-DLLVM_ENABLE_DUMP=ON"
-           "-DLLVM_LINK_LLVM_DYLIB=ON"
-           "-DLLVM_VERSION_SUFFIX:STRING=jl"))))
-    (inputs
-     (append
-       (package-inputs llvm-11)
-       `(("llvm-11-AArch64-FastIsel-bug"
-          ,(julia-patch "llvm-11-AArch64-FastIsel-bug"
-                        "1m2vddj1mw4kbij8hbrx82piyy6bvr2x7wwdnlxfaqcm72ipzyh9"))
-         ("llvm-11-D97435-AArch64-movaddrreg"
-          ,(julia-patch "llvm-11-D97435-AArch64-movaddrreg"
-                        "10jnavq9ljkj7j2gqj2zd1pwqpqb5zs3zp9h96pmz0djbmxwa86y"))
-         ("llvm-11-D97571-AArch64-loh"
-          ,(julia-patch "llvm-11-D97571-AArch64-loh"
-                        "128zcbg1w1j7hngsf7z1a7alc6lig6l2rqgjp6i8nk3k3f842v6n"))
-         ("llvm-11-aarch64-addrspace"
-          ,(julia-patch "llvm-11-aarch64-addrspace"
-                        "0ckbzgfirxrf2d5bpinpngp7gnilbjrk0cbdfyl3h6f5v6i6xj6m")))))))
+     (substitute-keyword-arguments (package-arguments llvm-13)
+       ((#:configure-flags flags ''())
+        #~(cons* "-DLLVM_BUILD_LLVM_DYLIB=ON"
+                 "-DLLVM_LINK_LLVM_DYLIB=ON"
+                 ;; "-DLLVM_EXPERIMENTAL_TARGETS_TO_BUILD=NVPTX"
+                 "-DLLVM_VERSION_SUFFIX:STRING=jl"  ; Perhaps not needed.
+                 #$(string-append "-DLLVM_TARGETS_TO_BUILD="
+                                  (system->llvm-target))
+                 (delete "-DBUILD_SHARED_LIBS:BOOL=TRUE" #$flags)))
+       ((#:build-type _) "Release")))
+    (properties `((hidden? . #t)
+                  ,@(package-properties llvm-13)))))
 
 (define %cling-version "0.9")