diff options
| author | Marius Bakke <mbakke@fastmail.com> | 2019-10-21 00:33:43 +0200 |
|---|---|---|
| committer | Marius Bakke <mbakke@fastmail.com> | 2019-10-21 00:33:43 +0200 |
| commit | 023522d3a1e81fe9bc803183337fdc8c183a88c4 (patch) | |
| tree | ec374744812891a627f33fa457b0bcf083e2c142 /gnu/packages | |
| parent | 07abc851ce8a580253061e065b31a4037d2f965d (diff) | |
| parent | 7373eb8304e0ebbfabe66deb59e78187013403dd (diff) | |
Merge branch 'master' into staging
Diffstat (limited to 'gnu/packages')
49 files changed, 960 insertions, 320 deletions
diff --git a/gnu/packages/abiword.scm b/gnu/packages/abiword.scm index 9d8c253a62..db9f1bb72c 100644 --- a/gnu/packages/abiword.scm +++ b/gnu/packages/abiword.scm @@ -83,7 +83,7 @@ ;; the tests to pass. #:tests? #f #:make-flags - (list "CXXFLAGS=-std=c++11" "gtk_update_icon_cache=true"))) + (list "gtk_update_icon_cache=true"))) (inputs `(("boost" ,boost) ("enchant" ,enchant) diff --git a/gnu/packages/aidc.scm b/gnu/packages/aidc.scm index 61d3331c97..77db0ac9fc 100644 --- a/gnu/packages/aidc.scm +++ b/gnu/packages/aidc.scm @@ -130,8 +130,7 @@ C/C++ programs to use its capabilities without restrictions or overhead.") "--with-python=auto" (string-append "--with-dbusconfdir=" (assoc-ref %outputs "out") - "/etc") - "CXXFLAGS=-std=c++11"))) + "/etc")))) (native-inputs `(("glib" ,glib "bin") ("pkg-config" ,pkg-config))) diff --git a/gnu/packages/android.scm b/gnu/packages/android.scm index b312c5b2af..993d18a3eb 100644 --- a/gnu/packages/android.scm +++ b/gnu/packages/android.scm @@ -217,7 +217,6 @@ in Main, System, Radio and Events sub-logs.") (build-system android-ndk-build-system) (arguments `(#:tests? #f ; Test failure: logging.UNIMPLEMENTED - #:make-flags '("CXXFLAGS=-std=gnu++11") #:phases (modify-phases %standard-phases (add-after 'unpack 'enter-source @@ -257,7 +256,7 @@ various Android core host applications.") "CC = gcc\n" "CFLAGS += -fPIC\n" - "CXXFLAGS += -std=gnu++11 -fPIC\n" + "CXXFLAGS += -fPIC\n" "CPPFLAGS += -Iinclude -I../include\n" "LDFLAGS += -shared -Wl,-soname,$(NAME).so.0\n" @@ -312,7 +311,7 @@ various Android core host applications.") (build-system android-ndk-build-system) (arguments `(#:make-flags '("CFLAGS=-Wno-error" - "CXXFLAGS=-fpermissive -Wno-error -std=gnu++11") + "CXXFLAGS=-fpermissive -Wno-error") #:phases (modify-phases %standard-phases (add-after 'unpack 'enter-source @@ -631,8 +630,7 @@ file system.") (source (android-platform-system-core version)) (build-system android-ndk-build-system) (arguments - `(#:make-flags (list "CXXFLAGS=-std=gnu++11") - #:phases + `(#:phases (modify-phases %standard-phases (add-after 'unpack 'enter-source (lambda _ diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index 88f3b5eccd..110903e2fe 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -521,8 +521,6 @@ formant warp.") `(#:tests? #f ; no check target #:make-flags (list "LV2PEG=ttl2c" - "CXXFLAGS=-std=gnu++11" - "CFLAGS=-std=gnu++11" (string-append "prefix=" %output) (string-append "pkgdatadir=" %output "/share/azr3-jack")) #:phases @@ -1328,8 +1326,7 @@ patches that can be used with softsynths such as Timidity and WildMidi.") #:configure-flags (list ;; Add the output lib directory to the RUNPATH. - (string-append "--ldflags=-Wl,-rpath=" %output "/lib") - "--cxxflags=-std=c++11") + (string-append "--ldflags=-Wl,-rpath=" %output "/lib")) #:phases (modify-phases %standard-phases (add-after 'unpack 'fix-boost-includes @@ -2427,9 +2424,7 @@ the Turtle syntax.") "0ay7hl6nr6ip1nn9k2m8ri3b52b6sx9mhixmcy4fy3kr2a88ksd1")))) (build-system waf-build-system) (arguments - `(#:tests? #f ; no check target - #:configure-flags - '("CXXFLAGS=-std=gnu++11"))) + `(#:tests? #f)) ;no check target (inputs `(("lv2" ,lv2) ("gtk+" ,gtk+-2) diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm index a92c8c9aca..a4a087728f 100644 --- a/gnu/packages/backup.scm +++ b/gnu/packages/backup.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2018, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2019 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2019 Marius Bakke <mbakke@fastmail.com> +;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -711,63 +712,6 @@ NTFS volumes using @code{ntfs-3g}, preserving NTFS-specific attributes.") license:lgpl3+ license:cc0)))) -(define-public obnam - (package - (name "obnam") - (version "1.21") - (source - (origin - (method url-fetch) - (uri (string-append - "http://code.liw.fi/debian/pool/main/o/obnam/obnam_" - version ".orig.tar.xz")) - (sha256 - (base32 - "0qlipsq50hca71zc0dp1mg9zs12qm0sbblw7qfzl0hj6mk2rv1by")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 - #:phases - (modify-phases %standard-phases - (replace 'check - (lambda _ - (substitute* "obnamlib/vfs_local_tests.py" - ;; Check for the nobody user instead of root. - (("self.fs.get_username\\(0\\), 'root'") - "self.fs.get_username(65534), 'nobody'") - ;; Disable tests checking for root group. - (("self.fs.get_groupname\\(0\\)") "'root'")) - (substitute* "obnamlib/vfs_local.py" - ;; Don't cover get_groupname function. - (("def get_groupname\\(self, gid\\):") - "def get_groupname(self, gid): # pragma: no cover")) - ;; Can't run network tests. - (invoke "./check" "--unit-tests")))))) - (inputs - `(("python2-cliapp" ,python2-cliapp) - ("python2-larch" ,python2-larch) - ("python2-paramiko" ,python2-paramiko) - ("python2-pyaml" ,python2-pyaml) - ("python2-tracing" ,python2-tracing) - ("python2-ttystatus" ,python2-ttystatus))) - (native-inputs - `(("gnupg" ,gnupg) - ("python2-coverage" ,python2-coverage) - ("python2-coverage-test-runner" ,python2-coverage-test-runner) - ("python2-pep8" ,python2-pep8) - ("python2-pylint" ,python2-pylint))) - (home-page "https://obnam.org/") - (synopsis "Retired backup program") - (description - "Warning: @uref{https://blog.liw.fi/posts/2017/08/13/retiring_obnam/, -the Obnam project is retired}. You should use another backup solution instead. - -Obnam was an easy, secure backup program. Features included snapshot backups, -data de-duplication and encrypted backups using GnuPG. Backups can be stored on -local hard disks, or online via the SSH SFTP protocol. The backup server, if -used, does not require any special software, on top of SSH.") - (license license:gpl3+))) - (define-public dirvish (package (name "dirvish") diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2187572117..cf5097a74e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3484,14 +3484,14 @@ profiles (GO and KEGG) of gene and gene clusters.") (define-public r-mlinterfaces (package (name "r-mlinterfaces") - (version "1.64.0") + (version "1.64.1") (source (origin (method url-fetch) (uri (bioconductor-uri "MLInterfaces" version)) (sha256 (base32 - "0zqvxmvbkig3cc4r5k405s53d7y5ccvrf8kf5j6v8s1kkrklai4j")))) + "1c1hciwy37zpr5bzdjj2xxx2r4jdfmr5w0zmg010lm2985z41gqh")))) (properties `((upstream-name . "MLInterfaces"))) (build-system r-build-system) (propagated-inputs diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1e8e357187..f55740e231 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1443,8 +1443,7 @@ confidence to have in an alignment.") "-lboost_system" "-lboost_iostreams" "-lz" - "-fopenmp" - "-std=c++11")))) + "-fopenmp")))) #:phases (modify-phases %standard-phases (add-after 'unpack 'do-not-build-bundled-pigz @@ -1556,14 +1555,14 @@ gapped, local, and paired-end alignment modes.") (define-public bowtie1 (package (name "bowtie1") - (version "1.2.2") + (version "1.2.3") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/" - version "/bowtie-" version "-src.zip")) + version "/bowtie-src-x86_64.zip")) (sha256 (base32 - "1jl2cj9bz8lwz8dwnxbycn8yp8g4kky62fkcxifyf1ri0y6n2vc0")) + "0vmiqdhc9dzyfy9sh6vgi7k9xy2hiw8g87vbamnc6cgpm179zsa4")) (modules '((guix build utils))) (snippet '(substitute* "Makefile" @@ -7731,13 +7730,13 @@ biological sequences or sets of sequences.") (define-public r-rsamtools (package (name "r-rsamtools") - (version "2.0.2") + (version "2.0.3") (source (origin (method url-fetch) (uri (bioconductor-uri "Rsamtools" version)) (sha256 (base32 - "188k5g40lbli7dxr96hldyvg9r9hmlbh2fp0qs5nnd12b8zbf338")))) + "03qfpaqbffirpnby88mv6h45njfapli28crdvg35h2zi2jkkmhvp")))) (properties `((upstream-name . "Rsamtools"))) (build-system r-build-system) @@ -8283,14 +8282,14 @@ secondary structure and comparative analysis in R.") (define-public r-rhtslib (package (name "r-rhtslib") - (version "1.16.2") + (version "1.16.3") (source (origin (method url-fetch) (uri (bioconductor-uri "Rhtslib" version)) (sha256 (base32 - "07qaqj2hypmrg40m3pci082bzar6wi10dh77r4a8x74dfppcwdzf")))) + "1lmrfr32nrz36abn440kvzzck53y2320xjxqzs2jw7m2a9h3ryak")))) (properties `((upstream-name . "Rhtslib"))) (build-system r-build-system) ;; Without this a temporary directory ends up in the Rhtslib.so binary, @@ -8571,13 +8570,13 @@ of gene-level counts.") (define-public r-rhdf5 (package (name "r-rhdf5") - (version "2.28.0") + (version "2.28.1") (source (origin (method url-fetch) (uri (bioconductor-uri "rhdf5" version)) (sha256 (base32 - "0y1w3cs7wg2b3jlkd6wyyz6626xg011nrg36si8gg371iqck9a1i")))) + "027cv1kh3xl66lrrahv2jgfmvgcwfpcj9dpgdj5fd9ybf5nyjcwb")))) (build-system r-build-system) (propagated-inputs `(("r-rhdf5lib" ,r-rhdf5lib))) @@ -9705,14 +9704,14 @@ microarrays or GRanges for sequencing data.") (define-public r-keggrest (package (name "r-keggrest") - (version "1.24.0") + (version "1.24.1") (source (origin (method url-fetch) (uri (bioconductor-uri "KEGGREST" version)) (sha256 (base32 - "1yjrpbm5zfg0h3nb5gg06q2f19ydbhjqwi0jb6q3p8dyrgww9mqp")))) + "0yxp3iajdy61q6mjgp1nxdgmf2yb58cvqmdgab7lqxr0ky1wkfkr")))) (properties `((upstream-name . "KEGGREST"))) (build-system r-build-system) (propagated-inputs @@ -9852,14 +9851,14 @@ originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): (define-public r-ensembldb (package (name "r-ensembldb") - (version "2.8.0") + (version "2.8.1") (source (origin (method url-fetch) (uri (bioconductor-uri "ensembldb" version)) (sha256 (base32 - "09s5g9xm9m8mqvzk6pkp9fyhx3zyb4p8yziz49mhfji5n35nydjr")))) + "103z902104ljdp6s9y2dmgrl5wkdz8vvlbbqgk8r4drkg7m3d4lj")))) (build-system r-build-system) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) @@ -10188,14 +10187,14 @@ by Ernst and Kellis.") (define-public r-ldblock (package (name "r-ldblock") - (version "1.14.2") + (version "1.14.3") (source (origin (method url-fetch) (uri (bioconductor-uri "ldblock" version)) (sha256 (base32 - "0xx04cghx6ads1ackwnw3z0gf72qv461nznzmcnkgmp7w5n9m2af")))) + "154yvrvs8ik7ifcny1681cmqra0i163j00k4vbvkvl701p5gsp5q")))) (build-system r-build-system) (propagated-inputs `(("r-biocgenerics" ,r-biocgenerics) @@ -10322,14 +10321,14 @@ with your data.") (define-public r-gwascat (package (name "r-gwascat") - (version "2.16.0") + (version "2.16.1") (source (origin (method url-fetch) (uri (bioconductor-uri "gwascat" version)) (sha256 (base32 - "0akb36mrybmxbb1bc9kgxbnj3cdypfylj3yzrmhjwqxml03mg61i")))) + "0d4krqx8zjniwp6k2vzwqgfws39w03x51kqiwd5dks1fp05sw4xh")))) (build-system r-build-system) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) @@ -10428,14 +10427,14 @@ provided.") (define-public r-hdf5array (package (name "r-hdf5array") - (version "1.12.2") + (version "1.12.3") (source (origin (method url-fetch) (uri (bioconductor-uri "HDF5Array" version)) (sha256 (base32 - "0afradisrr5gn0lf2kxjw55vdm3lm9mlgx53qlr9r40c1hrydpf5")))) + "1037j6f0yyw4cf6p051810qamxi1sji5w4d0fgq5lyzyl5d36fm6")))) (properties `((upstream-name . "HDF5Array"))) (build-system r-build-system) (inputs @@ -10457,14 +10456,14 @@ block processing.") (define-public r-rhdf5lib (package (name "r-rhdf5lib") - (version "1.6.1") + (version "1.6.3") (source (origin (method url-fetch) (uri (bioconductor-uri "Rhdf5lib" version)) (sha256 (base32 - "0niz9dh66fcwbvqpkpsdlz9d06kwi3kfh45dhk3qz9g9qqyiakr1")) + "0q68n5jm7w99paibj8vkxbdksbyrxilzwc9dkp3zf8zrdc5qfxzy")) (modules '((guix build utils))) (snippet '(begin @@ -10510,8 +10509,8 @@ block processing.") (("HDF5_CXX_INCLUDE=.*") "HDF5_CXX_INCLUDE=./hdf5/c++/src\n") (("HDF5_INCLUDE=.*") "HDF5_INCLUDE=./hdf5/src\n") ;; szip is non-free software - (("cp \\$\\{SZIP_LIB\\}.*") "") - (("\\$\\{USER_LIB_DIR\\}libsz.a") ""))) + (("cp \"\\$\\{SZIP_LIB\\}.*") "") + (("PKG_LIBS =.*") "PKG_LIBS = -lz -lhdf5\n"))) #t))))) (inputs `(("zlib" ,zlib))) diff --git a/gnu/packages/bittorrent.scm b/gnu/packages/bittorrent.scm index 70f80398fa..43712d4bcf 100644 --- a/gnu/packages/bittorrent.scm +++ b/gnu/packages/bittorrent.scm @@ -110,7 +110,7 @@ (native-inputs `(("intltool" ,intltool) ("pkg-config" ,pkg-config))) - (home-page "http://www.transmissionbt.com/") + (home-page "https://transmissionbt.com/") (synopsis "Fast and easy BitTorrent client") (description "Transmission is a BitTorrent client that comes with graphical, @@ -400,18 +400,7 @@ and will take advantage of multiple processor cores where possible.") "--enable-tests") #:make-flags (list (string-append "LDFLAGS=-Wl,-rpath=" - (assoc-ref %outputs "out") "/lib")) - #:phases (modify-phases %standard-phases - (add-after 'unpack 'compile-python-c++11 - (lambda _ - ;; Make sure the Python bindings are compiled in C++ mode to - ;; avoid undefined references as mentioned in - ;; <https://github.com/qbittorrent/qBittorrent/issues/638>. - ;; XXX: This can be removed for 1.2+. - (substitute* "bindings/python/setup.py" - (("\\+ target_specific\\(\\)\\,") - "+ target_specific() + ['-std=c++11'],")) - #t))))) + (assoc-ref %outputs "out") "/lib")))) (inputs `(("boost" ,boost) ("openssl" ,openssl))) (native-inputs `(("python" ,python-2) diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm index 520728b52c..438f404e1a 100644 --- a/gnu/packages/bootloaders.scm +++ b/gnu/packages/bootloaders.scm @@ -430,6 +430,19 @@ tree binary files. These are board description files used by Linux and BSD.") also initializes the boards (RAM etc).") (license license:gpl2+))) +(define u-boot-2019.10 + (package + (inherit u-boot) + (version "2019.10") + (source (origin + (method url-fetch) + (uri (string-append + "ftp://ftp.denx.de/pub/u-boot/" + "u-boot-" version ".tar.bz2")) + (sha256 + (base32 + "053hcrwwlacqh2niisn0zas95zkbffw5aw5sdhixs8lmfdq60vcd")))))) + (define-public u-boot-tools (package (inherit u-boot) @@ -746,6 +759,76 @@ to Novena upstream, does not load u-boot.img from the first partition.") ("firmware-m0" ,rk3399-cortex-m0) ,@(package-native-inputs base)))))) +(define-public u-boot-rock64-rk3328 + (let ((base (make-u-boot-package "rock64-rk3328" "aarch64-linux-gnu"))) + (package + (inherit base) + (version (package-version u-boot-2019.10)) + (source (package-source u-boot-2019.10)) + (arguments + (substitute-keyword-arguments (package-arguments base) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'set-environment + (lambda* (#:key inputs #:allow-other-keys) + (let ((bl31 (string-append (assoc-ref inputs "firmware") + "/bl31.elf"))) + (setenv "BL31" bl31)) + #t)) + (add-after 'unpack 'add-u-boot-itb + (lambda _ + (substitute* "Kconfig" + (("default .u-boot.itb. if SPL_LOAD_FIT && .ROCKCHIP_RK3399") + "default \"u-boot.itb\" if SPL_LOAD_FIT && (ARCH_ROCKCHIP")) + #t)))))) + (native-inputs + `(("firmware" ,arm-trusted-firmware-rk3328) + ,@(package-native-inputs base)))))) + +(define-public u-boot-firefly-rk3399 + (let ((base (make-u-boot-package "firefly-rk3399" "aarch64-linux-gnu"))) + (package + (inherit base) + (version (package-version u-boot-2019.10)) + (source (package-source u-boot-2019.10)) + (arguments + (substitute-keyword-arguments (package-arguments base) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'set-environment + (lambda* (#:key inputs #:allow-other-keys) + (setenv "BL31" (string-append (assoc-ref inputs "firmware") + "/bl31.elf")) + #t)) + ;; Phases do not succeed on the bl31 ELF. + (delete 'strip) + (delete 'validate-runpath))))) + (native-inputs + `(("firmware" ,arm-trusted-firmware-rk3399) + ,@(package-native-inputs base)))))) + +(define-public u-boot-rockpro64-rk3399 + (let ((base (make-u-boot-package "rockpro64-rk3399" "aarch64-linux-gnu"))) + (package + (inherit base) + (version (package-version u-boot-2019.10)) + (source (package-source u-boot-2019.10)) + (arguments + (substitute-keyword-arguments (package-arguments base) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'set-environment + (lambda* (#:key inputs #:allow-other-keys) + (setenv "BL31" (string-append (assoc-ref inputs "firmware") + "/bl31.elf")) + #t)) + ;; Phases do not succeed on the bl31 ELF. + (delete 'strip) + (delete 'validate-runpath))))) + (native-inputs + `(("firmware" ,arm-trusted-firmware-rk3399) + ,@(package-native-inputs base)))))) + (define-public vboot-utils (package (name "vboot-utils") diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 5ecf0c1ba1..8d495aa1c9 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -21,11 +21,11 @@ ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2017, 2018 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com> -;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com> +;;; Copyright © 2017, 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2017, 2019 Kei Kebreau <kkebreau@posteo.net> ;;; Copyright © 2017 ng0 <ng0@n0.is> ;;; Copyright © 2015, 2017, 2018 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2016, 2017, 2018 Marius Bakke <mbakke@fastmail.com> +;;; Copyright © 2016, 2017, 2018, 2019 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017, 2018 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com> ;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com> @@ -1703,19 +1703,22 @@ unit tests and failing them if the unit test module does not exercise all statements in the module it tests.") (license license:gpl3+))) +;; Further releases, up to 2.4.3, have failing unit tests. See: +;; https://github.com/PyCQA/pylint/issues/3198. (define-public python-pylint (package (name "python-pylint") - (version "1.7.2") + (version "2.3.1") (source (origin - (method url-fetch) - (uri (string-append - "https://github.com/PyCQA/pylint/archive/pylint-" - version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/PyCQA/pylint") + (commit (string-append "pylint-" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "0mzn1czhf1mgr2wiqfihb274sja02h899b85kywdpivppa9nwrmp")))) + "17vvzbcqmkhr4icq5p3737nbiiyj1y3g1pa08n9mb1bsnvxmqq0z")))) (build-system python-build-system) (native-inputs `(("python-pytest" ,python-pytest) @@ -1726,22 +1729,6 @@ statements in the module it tests.") ("python-isort" ,python-isort) ("python-mccabe" ,python-mccabe) ("python-six" ,python-six))) - (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda _ - ;; Somehow, tests for python2-pylint - ;; fail if run from the build directory - (let ((work "/tmp/work")) - (mkdir-p work) - (setenv "PYTHONPATH" - (string-append (getenv "PYTHONPATH") ":" work)) - (copy-recursively "." work) - (with-directory-excursion "/tmp" - (invoke "python" "-m" "unittest" "discover" - "-s" (string-append work "/pylint/test") - "-p" "*test_*.py")))))))) (home-page "https://github.com/PyCQA/pylint") (synopsis "Python source code analyzer which looks for coding standard errors") @@ -1756,10 +1743,42 @@ possible to write plugins to add your own checks.") (properties `((python2-variant . ,(delay python2-pylint)))) (license license:gpl2+))) +;; Python2 is not supported anymore by Pylint. See: +;; https://github.com/PyCQA/pylint/issues/1763. (define-public python2-pylint (let ((pylint (package-with-python2 - (strip-python2-variant python-pylint)))) + (strip-python2-variant python-pylint)))) (package (inherit pylint) + (version "1.7.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/PyCQA/pylint") + (commit (string-append "pylint-" version)))) + (file-name (git-file-name (package-name pylint) version)) + (sha256 + (base32 + "0yyc1gxq66li2adyx8njs83dh1pliylzkdmihw0k5bn6z4aakh8s")))) + (arguments + `(,@(package-arguments pylint) + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; Somehow, tests fail if run from the build directory. + (let ((work "/tmp/work")) + (mkdir-p work) + (setenv "PYTHONPATH" + (string-append (getenv "PYTHONPATH") ":" work)) + (copy-recursively "." work) + (with-directory-excursion "/tmp" + (invoke "python" "-m" "unittest" "discover" + "-s" (string-append work "/pylint/test") + "-p" "*test_*.py")))))))) + (native-inputs + `(("python2-futures" ,python2-futures) + ,@(package-native-inputs pylint))) (propagated-inputs `(("python2-backports-functools-lru-cache" ,python2-backports-functools-lru-cache) @@ -2310,6 +2329,38 @@ program or test suite under a test bed with the previously recorded devices loaded.") (license license:lgpl2.1+))) +(define-public virtest + ;; No releases yet, so we take the commit that "vc" expects. + (let ((commit "f7d03ef39fceba168745bd29e1b20af6e7971e04") + (revision "0")) + (package + (name "virtest") + (version (git-version "0.0" revision commit)) + (home-page "https://github.com/mattkretz/virtest") + (source (origin + (method git-fetch) + (uri (git-reference (url home-page) (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "07pjyb0mk7y2w1dg1bhl26nb7416xa1mw16ifj6mmps5y6aq054l")))) + (build-system cmake-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'adjust-install-directory + (lambda _ + ;; Vc is the only consumer of this library, and expects + ;; to find it in "virtest/vir/" instead of "vir/vir/". + (substitute* "CMakeLists.txt" + (("DESTINATION include/vir") + "DESTINATION include/virtest")) + #t))))) + (synopsis "Header-only test framework") + (description + "@code{virtest} is a small header-only test framework for C++. It +grew out of the @dfn{Vc} project.") + (license license:bsd-3)))) + (define-public python-pyfakefs (package (name "python-pyfakefs") diff --git a/gnu/packages/code.scm b/gnu/packages/code.scm index 13e2c4ad44..512ca5d365 100644 --- a/gnu/packages/code.scm +++ b/gnu/packages/code.scm @@ -431,7 +431,6 @@ functionality such as HTML output.") '(#:build-type "RelWithDebInfo" #:configure-flags '("-DRTAGS_NO_ELISP_FILES=1" - "-DCMAKE_CXX_FLAGS=-std=c++11" "-DBUILD_TESTING=FALSE") #:tests? #f)) (native-inputs diff --git a/gnu/packages/coq.scm b/gnu/packages/coq.scm index fd69c44c22..2c5674f57a 100644 --- a/gnu/packages/coq.scm +++ b/gnu/packages/coq.scm @@ -256,8 +256,7 @@ inside Coq.") (arguments `(#:configure-flags (list (string-append "--libdir=" (assoc-ref %outputs "out") - "/lib/coq/user-contrib/Gappa") - "CXXFLAGS=-std=c++11") + "/lib/coq/user-contrib/Gappa")) #:phases (modify-phases %standard-phases (add-before 'configure 'fix-remake diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2088aef015..82a65d09f2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -546,13 +546,13 @@ directory.") (define-public r-htmlwidgets (package (name "r-htmlwidgets") - (version "1.5") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "htmlwidgets" version)) (sha256 (base32 - "1h2sj5h9vcssb73nz63gmw5bajs73m9q807fsypvr621gb1s124i")))) + "10fp306l1nybkah6jrlrqwwdb6zvklbddp8i3w9v9naj8la5jbnl")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -3089,14 +3089,14 @@ color labels, layout, etc.") (define-public r-stringdist (package (name "r-stringdist") - (version "0.9.5.2") + (version "0.9.5.3") (source (origin (method url-fetch) (uri (cran-uri "stringdist" version)) (sha256 (base32 - "0nw8c317qkfq63pr0prl0hx522ddfq4cbgixb5r4pq3fxk9z303l")))) + "1vbhn6qwj3bzplhq06bw1yqqq1qpf1zinnj27cr7pf1nqsbyx2nq")))) (build-system r-build-system) (home-page "https://github.com/markvanderloo/stringdist") (synopsis "Approximate string matching and string distance functions") @@ -6177,14 +6177,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.5.0") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0lrh2l9n2zd9n3zzknsxz6nlasnrayx3bplxlz7m616g56gr5nfp")))) + "1izqh4j0gzyk25cga67gs0i6rl0j471h5y2c3y1maz79r32fs7fd")))) (build-system r-build-system) (home-page "https://easystats.github.io/insight/") (synopsis "Easy access to model information for various model objects") @@ -8997,14 +8997,14 @@ netCDF files.") (define-public r-biocmanager (package (name "r-biocmanager") - (version "1.30.4") + (version "1.30.8") (source (origin (method url-fetch) (uri (cran-uri "BiocManager" version)) (sha256 (base32 - "0kxs76pixk1d2lpvkyrq6nnvv1rqf55ph5f7igkadyyqirf3y2ah")))) + "0pqgb7j4aqpcp3bapl313rmyxxj3j96s9csip4f65444gjy5r2x2")))) (properties `((upstream-name . "BiocManager"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/BiocManager/") @@ -10216,14 +10216,14 @@ decomposition is shared between datasets.") (define-public r-strucchange (package (name "r-strucchange") - (version "1.5-1") + (version "1.5-2") (source (origin (method url-fetch) (uri (cran-uri "strucchange" version)) (sha256 (base32 - "0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl")))) + "1y022363a4pp0mnji91sjh1qiyspkh09sybqwj03r9pmwrd7q93x")))) (build-system r-build-system) (propagated-inputs `(("r-sandwich" ,r-sandwich) @@ -12698,14 +12698,14 @@ utilities for sequence data management under the ACNUC system.") (define-public r-units (package (name "r-units") - (version "0.6-4") + (version "0.6-5") (source (origin (method url-fetch) (uri (cran-uri "units" version)) (sha256 (base32 - "1jz0mzd78sdfxkhqw041ji50hmhjk2ha55i31yjvz35nsw30lwi5")))) + "02nls8m0r1r7kljs4x35naz3szq62hyqyd5vracf1xwi1kz5kdsh")))) (build-system r-build-system) (inputs `(("udunits" ,udunits))) @@ -12724,14 +12724,14 @@ classes.") (define-public r-classint (package (name "r-classint") - (version "0.4-1") + (version "0.4-2") (source (origin (method url-fetch) (uri (cran-uri "classInt" version)) (sha256 (base32 - "00q1bpgblrldckn1rk166q1b0hgap2sjjyfmfcyh6ydk6y73ziir")))) + "0w980hrw8sgfdfyd5dsimalq7gwhvqm7507abk7k363pvgks23dv")))) (properties `((upstream-name . "classInt"))) (build-system r-build-system) (propagated-inputs @@ -14543,14 +14543,14 @@ batch correction, and data correction.") (define-public r-styler (package (name "r-styler") - (version "1.1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "styler" version)) (sha256 (base32 - "1k660lpjvd64gnf6bndcb1cq3qxsvik928kcn6271zmkhja5rgyb")))) + "0rdbz60x8bymis6r6188ia1y0ip3nhf5y363i4cmakr618irjab9")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index 3d2395ce4b..671ee89d7c 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -89,6 +89,7 @@ #:use-module (gnu packages bash) #:use-module (gnu packages cmake) #:use-module (gnu packages code) + #:use-module (gnu packages curl) #:use-module (gnu packages databases) #:use-module (gnu packages dictionaries) #:use-module (gnu packages emacs) @@ -117,6 +118,7 @@ #:use-module (gnu packages autotools) #:use-module (gnu packages base) #:use-module (gnu packages compression) + #:use-module (gnu packages node) #:use-module (gnu packages xml) #:use-module (gnu packages glib) #:use-module (gnu packages acl) @@ -5360,6 +5362,31 @@ splitting the input text by spaces and re-building it into a regular expression.") (license license:gpl3+))) +(define-public emacs-ivy-xref + (let ((commit "1a35fc0f070388701b05b0a455cbe262e924d547") + (revision "1")) + (package + (name "emacs-ivy-xref") + (version (git-version "0.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/alexmurray/ivy-xref.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0d71nm9d9ajp5i6dnl8h1hw9jqp8gd1ajgninb1h13i80rplzl9k")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-ivy" ,emacs-ivy))) + (home-page "https://github.com/alexmurray/ivy-xref") + (synopsis "Ivy interface for @code{xref}") + (description "This package provides an Ivy interface for selecting from +@code{xref} results.") + (license license:gpl3)))) + (define-public emacs-ivy-pass (let ((commit "5b523de1151f2109fdd6a8114d0af12eef83d3c5") (revision "1")) @@ -6013,6 +6040,34 @@ strings, and code folding.") (base32 "1kkj888k9x5n0i7xkia177gzsa84my3g8n0n7v65281cc4f1yhk5")))) (build-system emacs-build-system) + (inputs + `(("node" ,node))) + (native-inputs + `(("emacs-ert-expectations" ,emacs-ert-expectations))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-shell + ;; Setting the SHELL environment variable is required for the tests + ;; to find sh. + (lambda _ + (setenv "SHELL" (which "sh")) + #t)) + (add-after 'unpack 'configure + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((node (assoc-ref inputs "node"))) + ;; Specify the absolute file names of the various + ;; programs so that everything works out-of-the-box. + (make-file-writable "nodejs-repl.el") + (emacs-substitute-variables + "nodejs-repl.el" + ("nodejs-repl-command" + (string-append node "/bin/node"))))))) + #:tests? #t + #:test-command '("emacs" "-Q" "--batch" + "-L" "." + "-l" "test/test.el" + "-f" "ert-run-tests-batch-and-exit"))) (home-page "https://github.com/abicky/nodejs-repl.el") (synopsis "Node.js REPL inside Emacs") (description @@ -6115,6 +6170,32 @@ provides the following features: in Emacs.") (license license:gpl3+))) +(define-public emacs-evil-markdown + (let ((commit "46cd81b37991c4325fc24015a610f832b0ff995d") + (revision "1")) + (package + (name "emacs-evil-markdown") + (version (git-version "0.0.2" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Somelauw/evil-markdown.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0mad8sp5y9vyk28595qygspnyh8bfmb1fbxjlw70qwc1kdn822n4")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-markdown-mode" ,emacs-markdown-mode) + ("emacs-evil" ,emacs-evil))) + (home-page "http://jblevins.org/projects/evil-markdown/") + (synopsis "Evil keybindings for @code{markdown-mode}") + (description + "This package provides custom text objects and bindings for +@code{markdown-mode}.") + (license license:gpl3+)))) + (define-public emacs-edit-indirect (package (name "emacs-edit-indirect") @@ -6123,8 +6204,8 @@ in Emacs.") (origin (method git-fetch) (uri (git-reference - (url "https://github.com/Fanael/edit-indirect") - (commit version))) + (url "https://github.com/Fanael/edit-indirect") + (commit version))) (file-name (git-file-name name version)) (sha256 (base32 @@ -13070,12 +13151,11 @@ within Emacs.") (license license:gpl3+)))) (define-public emacs-ibuffer-projectile - (let ((commit "c18ac540ee46cb759fc5df18747f6e8d23563011") - (revision "1")) + (let ((commit "76496214144687cee0b5139be2e61b1e400cac87") + (revision "2")) (package (name "emacs-ibuffer-projectile") - (version (string-append "0.2" "-" revision "." - (string-take commit 7))) + (version (git-version "0.2" revision commit)) (source (origin (method git-fetch) @@ -13085,7 +13165,7 @@ within Emacs.") (file-name (git-file-name name version)) (sha256 (base32 - "1nd26cwwdpnwj0g4w393rd59klpyr6wqrnyr6scmwb5d06bsm44n")))) + "0vv9xwb1qd5x8zhqmmsn1nrpd11cql9hxb7483nsdhcfwl4apqav")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-projectile" ,emacs-projectile))) @@ -17377,8 +17457,8 @@ and code peeking.") (license license:gpl3+))) (define-public emacs-lsp-ivy - (let ((commit "6fd55316dd62d290429c25ea9b0c1f66069b2f37") - (revision "1")) + (let ((commit "caf1e1d7e22ed0b5fe18dd508d1a6f83dd163288") + (revision "2")) (package (name "emacs-lsp-ivy") (version (git-version "0.1" revision commit)) @@ -17390,7 +17470,7 @@ and code peeking.") (file-name (git-file-name name version)) (sha256 (base32 - "0hx9rs66ahl2rqgnmyiyrwk12v7iv8c6gnn7b66985mxjqyyh94r")))) + "084ds4qhzhivfnicy3h7z4mblxgcqx8pfnkbjr9qjrfng7cisy4z")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-ivy" ,emacs-ivy) @@ -17537,10 +17617,10 @@ a suffix) we prefer to call it just a \"transient\".") (license license:gpl3+)))) (define-public emacs-forge - (let ((commit "a6721c071226ae8da6852e9330f2bdcba92a4577")) + (let ((commit "63cbf81f166fc71861d8e3d246df8e5ccedcb9bb")) (package (name "emacs-forge") - (version (git-version "0.1.0" "1" commit)) + (version (git-version "0.1.0" "2" commit)) (source (origin (method git-fetch) @@ -17550,7 +17630,7 @@ a suffix) we prefer to call it just a \"transient\".") (file-name (git-file-name name version)) (sha256 (base32 - "1gzr1di29a9szkzm6kjznq7c8md71cm5761pznf08nmmk63dl3zm")))) + "1yf2xjx3459py6rji740jm8bmh2pv66ghnbjxsvjd4jf9kcdav83")))) (build-system gnu-build-system) (native-inputs `(("texinfo" ,texinfo) @@ -18068,11 +18148,10 @@ invoked.") (define-public emacs-web-server (let ((commit "cafa5b7582c57252a0884b2c33da9b18fb678713") - (version "0.1.1") (revision "1")) (package (name "emacs-web-server") - (version (git-version version revision commit)) + (version (git-version "0.1.0" revision commit)) (source (origin (method git-fetch) @@ -18084,6 +18163,19 @@ invoked.") (base32 "1c0lfqmbs5hvz3fh3c8wgp6ipwmxrwx9xj264bjpj3phixd5419y")))) (build-system emacs-build-system) + (native-inputs + `(("curl" ,curl))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-shell + ;; Setting the SHELL environment variable is required for the tests + ;; to find sh. + (lambda _ + (setenv "SHELL" (which "sh")) + #t))) + #:tests? #t + #:test-command '("make" "check"))) (home-page "https://github.com/eschulte/emacs-web-server/") (synopsis "Web server with handlers in Emacs Lisp") (description "This package supports HTTP GET and POST requests with diff --git a/gnu/packages/emulators.scm b/gnu/packages/emulators.scm index f6da7f2d25..1e5629451d 100644 --- a/gnu/packages/emulators.scm +++ b/gnu/packages/emulators.scm @@ -161,7 +161,7 @@ (string-append (assoc-ref inputs "vulkan-loader") "/lib/libvulkan.so"))) (chdir "docs") - (invoke "bash" "-c" "g++ -O2 -std=c++11 $(freetype-config \ + (invoke "bash" "-c" "g++ -O2 $(freetype-config \ --cflags --libs) gc-font-tool.cpp -o gc-font-tool") (invoke "./gc-font-tool" "a" fontfile "font_western.bin") (invoke "./gc-font-tool" "s" fontfile "font_japanese.bin") diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index 169d912c35..d1626f0342 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -1546,7 +1546,7 @@ unique design feature of Trilinos is its focus on packages.") `(#:tests? #f #:configure-flags (list - "CXXFLAGS=-O3 -std=c++11" + "CXXFLAGS=-O3" (string-append "ARCHDIR=" (assoc-ref %build-inputs "trilinos"))))) (native-inputs @@ -1586,7 +1586,7 @@ parallel computing platforms. It also supports serial execution.") (arguments `(,@(substitute-keyword-arguments (package-arguments xyce-serial) ((#:configure-flags flags) - `(list "CXXFLAGS=-O3 -std=c++11" + `(list "CXXFLAGS=-O3" "CXX=mpiCC" "CC=mpicc" "F77=mpif77" diff --git a/gnu/packages/firmware.scm b/gnu/packages/firmware.scm index c473ccd920..cc92c228ad 100644 --- a/gnu/packages/firmware.scm +++ b/gnu/packages/firmware.scm @@ -389,6 +389,10 @@ Virtual Machines. OVMF contains a sample UEFI firmware for QEMU and KVM.") (url "https://github.com/ARM-software/arm-trusted-firmware.git") (commit (string-append "v" version)))) (file-name (git-file-name "arm-trusted-firmware" version)) + (patches (search-patches + "arm-trusted-firmware-optional-bin-generation.patch" + "arm-trusted-firmware-rockchip-disable-binary.patch" + "arm-trusted-firmware-disable-hdcp.patch")) (sha256 (base32 "1gy5qskrjy8n3kxdcm1dx8b45l5b75n0pm8pq80wl6xic1ycy24r")))) @@ -397,10 +401,16 @@ Virtual Machines. OVMF contains a sample UEFI firmware for QEMU and KVM.") `(#:phases (modify-phases %standard-phases (delete 'configure) ; no configure script + ;; Remove binary blobs which do not contain source or proper license. + (add-after 'unpack 'remove-binary-blobs + (lambda _ + (for-each (lambda (file) + (delete-file file)) + (find-files "." ".*\\.bin$")))) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) - (bin (find-files "." ".*\\.bin$"))) + (bin (find-files "." ".*\\.(bin|elf)$"))) (for-each (lambda (file) (install-file file out)) @@ -456,6 +466,9 @@ such as: (inherit base) (name "arm-trusted-firmware-sun50i-a64")))) +(define-public arm-trusted-firmware-rk3328 + (make-arm-trusted-firmware "rk3328")) + (define-public arm-trusted-firmware-puma-rk3399 (let ((base (make-arm-trusted-firmware "rk3399")) ;; Vendor's arm trusted firmware branch hasn't been upstreamed yet. @@ -476,6 +489,16 @@ such as: (base32 "0vqhwqqh8h9qlkpybg2v94911091c1418bc4pnzq5fd7zf0fjkf8"))))))) +(define-public arm-trusted-firmware-rk3399 + (let ((base (make-arm-trusted-firmware "rk3399"))) + (package + (inherit base) + (name "arm-trusted-firmware-rk3399") + (native-inputs + `(("cross32-gcc" ,(cross-gcc "arm-none-eabi")) + ("cross32-binutils", (cross-binutils "arm-none-eabi")) + ,@(package-native-inputs base)))))) + (define-public rk3399-cortex-m0 (package (name "rk3399-cortex-m0") diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index f17bd941cd..781f450621 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -2339,7 +2339,7 @@ editors, IDEs, etc.") (package (inherit vte) (name "vte-ng") - (version "0.56.2.a") + (version "0.58.2.a") (home-page "https://github.com/thestinger/vte-ng") (source (origin (method git-fetch) @@ -2347,20 +2347,13 @@ editors, IDEs, etc.") (file-name (git-file-name name version)) (sha256 (base32 - "1lmba6i0abifmvvfb1q63ql6zh6d38148kp6skmkggiib2hi5dki")))) + "0rnm5c6m3abbm81jsfdas0y80z299ny54gr4syn4bfrms3s4g19l")))) + (build-system meson-build-system) (native-inputs `(("gtk-doc" ,gtk-doc) - ("gperf" ,gperf) - ("autoconf" ,autoconf) - ("automake" ,automake) - ("libtool" ,libtool) ,@(package-native-inputs vte))) (arguments - `(#:phases (modify-phases %standard-phases - (replace 'bootstrap - (lambda _ - (setenv "NOCONFIGURE" "true") - (invoke "sh" "autogen.sh")))))) + `(#:configure-flags '("-Ddocs=true"))) (synopsis "Enhanced VTE terminal widget") (description "VTE is a library (libvte) implementing a terminal emulator widget for @@ -5635,7 +5628,12 @@ Compatible with Cisco VPN concentrators configured to use IPsec.") to @acronym{VPNs, virtual private networks} via OpenConnect, an open client for Cisco's AnyConnect SSL VPN.") (license license:gpl2+) - (properties `((upstream-name . "NetworkManager-openconnect"))))) + (properties `((upstream-name . "NetworkManager-openconnect") + + ;; The 'etc/dbus-1/system.d/nm-openconnect-service.conf' + ;; file refers to account "nm-openconnect". Specify it here + ;; so that 'network-manager-service-type' creates it. + (user-accounts . ("nm-openconnect")))))) (define-public mobile-broadband-provider-info (package diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm index 06e5f6782f..ed89b2661b 100644 --- a/gnu/packages/gnupg.scm +++ b/gnu/packages/gnupg.scm @@ -866,8 +866,6 @@ software."))) (inputs `(("qtbase" ,qtbase) ,@(package-inputs pinentry-tty))) - (arguments - `(#:configure-flags '("CXXFLAGS=-std=gnu++11"))) (description "Pinentry provides a console and a Qt GUI that allows users to enter a passphrase when @code{gpg} is run and needs it."))) diff --git a/gnu/packages/gobby.scm b/gnu/packages/gobby.scm index a7eb1ea0cd..91484c7576 100644 --- a/gnu/packages/gobby.scm +++ b/gnu/packages/gobby.scm @@ -47,9 +47,7 @@ (native-inputs `(("pkg-config" ,pkg-config))) (arguments - `(#:configure-flags - '("CXXFLAGS=-std=c++11") ; required by libsigc++ - #:phases + `(#:phases (modify-phases %standard-phases (add-before 'configure 'update-gnutls-api (lambda _ @@ -88,9 +86,6 @@ `(("libsigc++" ,libsigc++) ("gnutls" ,gnutls) ("libnet6" ,libnet6))) - (arguments - ;; Required by libsigc++. - `(#:configure-flags '("CXXFLAGS=-std=c++11"))) (home-page "https://gobby.github.io/") (synopsis "Library for building collaborative editors") (description diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index bde8b44a30..9979b176d7 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -389,7 +389,7 @@ contains supporting code for evaluation and parameter tuning.") PYTHONCFLAGS =-I~a/include/python~am/ -I~a/lib/python~a/site-packages/numpy/core/include LIBS = -lpython~am -lfaiss SHAREDFLAGS = -shared -fopenmp -CXXFLAGS = -fpermissive -std=c++11 -fopenmp -fPIC +CXXFLAGS = -fpermissive -fopenmp -fPIC CPUFLAGS = ~{~a ~}~%" (assoc-ref inputs "python*") python-version (assoc-ref inputs "python-numpy") python-version diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm index e453d9fa5b..917e7ba397 100644 --- a/gnu/packages/graphics.scm +++ b/gnu/packages/graphics.scm @@ -433,23 +433,31 @@ graphics.") #t)))) (build-system cmake-build-system) (arguments - '(#:phases + `(#:phases (modify-phases %standard-phases (add-after 'unpack 'change-directory (lambda _ (chdir "OpenEXR") #t)) - (add-after 'change-directory 'disable-broken-test - ;; This test fails on i686. Upstream developers suggest that - ;; this test is broken on i686 and can be safely disabled: - ;; https://github.com/openexr/openexr/issues/67#issuecomment-21169748 + (add-before 'check 'increase-test-timeout (lambda _ - (substitute* "IlmImfTest/main.cpp" - (("#include \"testOptimizedInterleavePatterns.h\"") - "//#include \"testOptimizedInterleavePatterns.h\"") - (("TEST \\(testOptimizedInterleavePatterns") - "//TEST (testOptimizedInterleavePatterns")) - #t))))) + ;; On armhf-linux, we need to override the CTest default + ;; timeout of 1500 seconds for the OpenEXR.IlmImf test. + (setenv "CTEST_TEST_TIMEOUT" "2000") + #t)) + ,@(if (not (target-64bit?)) + `((add-after 'change-directory 'disable-broken-test + ;; This test fails on i686. Upstream developers suggest that + ;; this test is broken on i686 and can be safely disabled: + ;; https://github.com/openexr/openexr/issues/67#issuecomment-21169748 + (lambda _ + (substitute* "IlmImfTest/main.cpp" + ((".*testOptimizedInterleavePatterns.*") "") + ;; This test is broken in 2.4.0 and will be fixed in a later + ;; release: <https://github.com/openexr/openexr/issues/571>. + ((".*testLargeDataWindowOffsets.*") "")) + #t))) + '())))) (native-inputs `(("pkg-config" ,pkg-config))) (propagated-inputs @@ -665,7 +673,6 @@ virtual reality, scientific visualization and modeling.") (list "COMPILED_BY=Guix" (string-append "--with-boost-libdir=" (assoc-ref %build-inputs "boost") "/lib") - "CXXFLAGS=-std=c++11" "--disable-optimiz-arch") #:phases (modify-phases %standard-phases diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm index 460f35dbae..2579da3d6a 100644 --- a/gnu/packages/image-processing.scm +++ b/gnu/packages/image-processing.scm @@ -269,10 +269,6 @@ integrates with various databases on GUI toolkits such as Qt and Tk.") "-DWITH_CAROTENE=OFF" ; only visible on arm/aarch64 "-DENABLE_PRECOMPILED_HEADERS=OFF" - ;; FIXME: OpenEXR requires C++11 or later. Remove this when - ;; the default compiler is GCC 7. - "-DCMAKE_CXX_FLAGS=-std=gnu++11" - ;; CPU-Features: ;; See cmake/OpenCVCompilerOptimizations.cmake ;; (CPU_ALL_OPTIMIZATIONS) for a list of all optimizations @@ -729,8 +725,7 @@ combine the information contained in both.") "-DSNAP_VERSION_GIT_BRANCH=release" "-DSNAP_VERSION_GIT_TIMESTAMP=0" "-DSNAP_PACKAGE_QT_PLUGINS=OFF" - "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" - "-DCMAKE_CXX_FLAGS=-std=gnu++11 -fpermissive") + "-DCMAKE_POSITION_INDEPENDENT_CODE=ON") #:phases (modify-phases %standard-phases ;; During the installation phase all libraries provided by all diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index 51b76162ef..ff9fdf4b36 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -973,11 +973,7 @@ supplies a generic doubly-linked list and some string functions.") ;; We need '-fpermissive' for Source/FreeImage.h. ;; libjxr doesn't have a pkg-config file. (string-append "CFLAGS+=-O2 -fPIC -fvisibility=hidden -fpermissive " - "-I" (assoc-ref %build-inputs "libjxr") "/include/jxrlib " - - ;; FIXME: OpenEXR 2.4.0 requires C++11 or later. - ;; Remove when the default compiler is > GCC 5. - "-std=gnu++11")) + "-I" (assoc-ref %build-inputs "libjxr") "/include/jxrlib")) #:tests? #f)) ; no check target (native-inputs `(("pkg-config" ,pkg-config) diff --git a/gnu/packages/kodi.scm b/gnu/packages/kodi.scm index d1a313187e..23afd138a3 100644 --- a/gnu/packages/kodi.scm +++ b/gnu/packages/kodi.scm @@ -104,14 +104,12 @@ (replace 'build (lambda _ (invoke "g++" "-c" "guid.cpp" "-o" "guid.o" - "-std=c++11" "-DGUID_LIBUUID") + "-DGUID_LIBUUID") (invoke "ar" "rvs" "libcrossguid.a" "guid.o"))) (replace 'check (lambda _ - (invoke "g++" "-c" "test.cpp" "-o" "test.o" - "-std=c++11") - (invoke "g++" "-c" "testmain.cpp" "-o" "testmain.o" - "-std=c++11") + (invoke "g++" "-c" "test.cpp" "-o" "test.o") + (invoke "g++" "-c" "testmain.cpp" "-o" "testmain.o") (invoke "g++" "test.o" "guid.o" "testmain.o" "-o" "test" "-luuid") (invoke (string-append (getcwd) "/test")))) @@ -282,6 +280,7 @@ alternatives. In compilers, this can reduce the cascade of secondary errors.") (base32 "1m0295czxabdcqyqf5m94av9d88pzhnzjvyfs1q07xqq82h313p7")) (patches (search-patches "kodi-skip-test-449.patch" + "kodi-increase-test-timeout.patch" "kodi-set-libcurl-ssl-parameters.patch")) (snippet '(begin diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index b0ffe5de07..d75d28ef0a 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -5679,7 +5679,7 @@ privileges.") (define-public psm2 (package (name "psm2") - (version "10.3-46") + (version "11.2.86") (source (origin (method git-fetch) (uri (git-reference @@ -5688,7 +5688,7 @@ privileges.") (file-name (git-file-name name version)) (sha256 (base32 - "0wadphv4rl5p38x6a3dgpbijlzqdvcn02cfafnp72nh9faz0zvlx")))) + "1hiqzcmc97lzhaqjva82vf8irgg038cciypsv2brw90ak09n6vwf")))) (build-system gnu-build-system) (arguments '(#:make-flags diff --git a/gnu/packages/lxqt.scm b/gnu/packages/lxqt.scm index e5487d3ae4..8d5d3522ec 100644 --- a/gnu/packages/lxqt.scm +++ b/gnu/packages/lxqt.scm @@ -1279,6 +1279,52 @@ easily publishing them on internet image hosting services.") like @command{tar} and @command{zip}.") (license license:gpl2+))) +(define-public lxqt-connman-applet + ;; since the main developers didn't release any version yet, their + ;; latest commit on `master` branch at the moment used for this version. + (let ((commit "3db374eebd8d851f68a50fc5d1ef5fa9478c275e") + (revision "0")) + (package + (name "lxqt-connman-applet") + (version (git-version "0.14.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url (string-append "https://github.com/lxqt/" name ".git")) + (commit commit))) + (file-name (git-file-name name version)) + (sha256 (base32 "1brkyzjmpa7hiv8p8rvmkcgagchh2zn71ry4pjiplga05as3jc11")))) + (build-system cmake-build-system) + (inputs + `(("kwindowsystem" ,kwindowsystem) + ("qtbase" ,qtbase) + ("qtsvg" ,qtsvg) + ("liblxqt" ,liblxqt) + ("qtx11extras" ,qtx11extras) + ("libqtxdg" ,libqtxdg))) + (native-inputs + `(("lxqt-build-tools" ,lxqt-build-tools) + ("qtlinguist" ,qttools))) + (arguments + `(#:tests? #f ; no tests + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-translations-dir + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "CMakeLists.txt" + (("\\$\\{LXQT_TRANSLATIONS_DIR\\}") + (string-append (assoc-ref outputs "out") + "/share/lxqt/translations")) + (("\\$\\{LXQT_ETC_XDG_DIR\\}") "etc/xdg")) + #t))))) + (home-page "https://github.com/lxqt/lxqt-connman-applet") + (synopsis "System-tray applet for connman") + (description "This package provides a Qt-based system-tray applet for +the network management tool Connman, originally developed for the LXQT +desktop.") + (license license:lgpl2.1+)))) + ;; The LXQt Desktop Environment (define-public lxqt diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 254ee59c4a..2b2df6da6a 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1302,7 +1302,7 @@ Python.") ("openssl" ,openssl) ("zlib" ,zlib))) (native-inputs - `(("protobuf" ,protobuf-next) + `(("protobuf" ,protobuf) ("python" ,python-wrapper))) (home-page "https://grpc.io") (synopsis "High performance universal RPC framework") @@ -1607,8 +1607,8 @@ INSTALL_RPATH " (assoc-ref outputs "out") "/lib)\n"))) #t)))))) (native-inputs `(("pkg-config" ,pkg-config) - ("protobuf:native" ,protobuf-next) ; protoc - ("protobuf:src" ,(package-source protobuf-next)) + ("protobuf:native" ,protobuf-3.6) ; protoc + ("protobuf:src" ,(package-source protobuf-3.6)) ("eigen:src" ,(package-source eigen-for-tensorflow)) ;; install_pip_packages.sh wants setuptools 39.1.0 specifically. ("python-setuptools" ,python-setuptools-for-tensorflow) @@ -1735,7 +1735,7 @@ INSTALL_RPATH " (assoc-ref outputs "out") "/lib)\n"))) ("python-gast" ,python-gast) ("python-grpcio" ,python-grpcio) ("python-numpy" ,python-numpy) - ("python-protobuf" ,python-protobuf-next) + ("python-protobuf" ,python-protobuf-3.6) ("python-six" ,python-six) ("python-termcolo" ,python-termcolor) ("python-wheel" ,python-wheel))) @@ -1751,7 +1751,7 @@ INSTALL_RPATH " (assoc-ref outputs "out") "/lib)\n"))) ("jsoncpp" ,jsoncpp-for-tensorflow) ("snappy" ,snappy) ("sqlite" ,sqlite) - ("protobuf" ,protobuf-next) + ("protobuf" ,protobuf-3.6) ("python" ,python-wrapper) ("zlib" ,zlib))) (home-page "https://tensorflow.org") diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 64e8b771fc..578a5c07fa 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -849,14 +849,14 @@ invoking @command{notifymuch} from the post-new hook.") (define-public notmuch (package (name "notmuch") - (version "0.29.1") + (version "0.29.2") (source (origin (method url-fetch) (uri (string-append "https://notmuchmail.org/releases/notmuch-" version ".tar.xz")) (sha256 (base32 - "0rg3rwghd3wivf3bmqcqpkkd5c779ld5hi363zjcw5fl6a7gqilq")))) + "1pjmrnbn0iavm5pnw7wgfw5d6hg5i6miqfa6s7s4027vn94n3nhv")))) (build-system gnu-build-system) (arguments `(#:modules ((guix build gnu-build-system) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 30d0717119..d83e3a30be 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -3977,14 +3977,14 @@ supports compressed MAT files, as well as newer (version 7.3) MAT files.") (define-public vc (package (name "vc") - (version "1.3.3") + (version "1.4.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/VcDevel/Vc/releases/" "download/" version "/Vc-" version ".tar.gz")) (sha256 (base32 - "1zmlpn32jzb38smp3j834llmbix3whsrbw0h397qxysbw792kih8")))) + "17qili8bf8r78cng65yf4qmgna8kiqjqbgcqbric6v9j6nkhkrk8")))) (build-system cmake-build-system) (arguments '(#:configure-flags @@ -3992,7 +3992,30 @@ supports compressed MAT files, as well as newer (version 7.3) MAT files.") ;; By default, Vc will optimize for the CPU of the build machine. ;; Setting this to "none" makes it create portable binaries. See ;; "cmake/OptimizeForArchitecture.cmake". - "-DTARGET_ARCHITECTURE=none"))) + "-DTARGET_ARCHITECTURE=none") + #:phases (modify-phases %standard-phases + (add-after 'unpack 'copy-testdata + (lambda* (#:key inputs native-inputs #:allow-other-keys) + (let ((testdata (assoc-ref (or native-inputs inputs) + "testdata"))) + (copy-recursively testdata "tests/testdata") + #t)))))) + (native-inputs + `(("virtest" ,virtest) + + ;; This is a submodule in the git project, but not part of the + ;; released sources. See the git branch for the commit to take. + ("testdata" ,(let ((commit "9ada1f34d6a41f1b5553d6223f277eae72c039d3")) + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/VcDevel/vc-testdata") + (commit "9ada1f34d6a41f1b5553d6223f277eae72c039d3"))) + (file-name (git-file-name "vc-testdata" + (string-take commit 7))) + (sha256 + (base32 + "1hkhqib03qlcq412ym2dciynfxcdr2ygqhnplz4l1vissr1wnqn2"))))))) (synopsis "SIMD vector classes for C++") (description "Vc provides portable, zero-overhead C++ types for explicitly data-parallel programming. It is a library designed to ease explicit diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 040dfad506..c0707772e4 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -1514,14 +1514,6 @@ special variant of additive synthesis.") (base32 "1882pfcmf3rqg3vd4qflzkppcv158d748i603spqjbxqi8z7x7w0")))) (build-system gnu-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'configure 'set-flags - (lambda _ - ;; Compile with C++11, required by gtkmm. - (setenv "CXXFLAGS" "-std=c++11") - #t))))) (inputs `(("alsa-lib" ,alsa-lib) ("jack" ,jack-1) @@ -3569,8 +3561,7 @@ develop custom plugins for use in other applications without programming.") (build-system gnu-build-system) (arguments `(#:configure-flags - (list "--enable-qt5" - "CXXFLAGS=-std=gnu++11"))) + (list "--enable-qt5"))) (inputs `(("qtbase" ,qtbase) ("alsa-lib" ,alsa-lib) @@ -3601,8 +3592,7 @@ modules running in parallel.") (build-system gnu-build-system) (arguments `(#:configure-flags - (list "--enable-qt5" - "CXXFLAGS=-std=gnu++11"))) + (list "--enable-qt5"))) (inputs `(("qtbase" ,qtbase) ("alsa-lib" ,alsa-lib))) @@ -3631,9 +3621,6 @@ defined as tabs in the main control surface.") "12dphdhnvfk1k0vmagi1v2lhyxjyj1j3cz6ksjw0ydcvid1x8ap2")) (patches (search-patches "seq24-rename-mutex.patch")))) (build-system gnu-build-system) - (arguments - `(#:configure-flags - (list "CXXFLAGS=-std=gnu++11"))) (inputs `(("gtkmm" ,gtkmm-2) ("alsa-lib" ,alsa-lib) diff --git a/gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch b/gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch new file mode 100644 index 0000000000..edae2352d9 --- /dev/null +++ b/gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch @@ -0,0 +1,82 @@ +From c7f0cd054578152a250f784bf82c8ca53aa91a02 Mon Sep 17 00:00:00 2001 +From: Ziyuan Xu <xzy.xu@rock-chips.com> +Date: Tue, 8 Oct 2019 10:27:05 +0800 +Subject: [PATCH] plat/rockchip: cliam a macro to enable hdcp feature for DP + +HDCP is using a binary driver, add macro PLAT_RK_DP_HDCP to make it as +an option. + +Change-Id: I54ef1a3635a28e8ae56654bd1e91dfe011520a7f +Signed-off-by: Ziyuan Xu <xzy.xu@rock-chips.com> +Signed-off-by: Kever Yang <kever.yang@rock-chips.com> +--- + plat/rockchip/rk3399/plat_sip_calls.c | 4 ++++ + plat/rockchip/rk3399/platform.mk | 11 +++++++---- + 2 files changed, 11 insertions(+), 4 deletions(-) + +diff --git a/plat/rockchip/rk3399/plat_sip_calls.c b/plat/rockchip/rk3399/plat_sip_calls.c +index c2cc5b11c..ce8476c9a 100644 +--- a/plat/rockchip/rk3399/plat_sip_calls.c ++++ b/plat/rockchip/rk3399/plat_sip_calls.c +@@ -56,17 +56,21 @@ uintptr_t rockchip_plat_sip_handler(uint32_t smc_fid, + void *handle, + u_register_t flags) + { ++#ifdef PLAT_RK_DP_HDCP + uint64_t x5, x6; ++#endif + + switch (smc_fid) { + case RK_SIP_DDR_CFG: + SMC_RET1(handle, ddr_smc_handler(x1, x2, x3, x4)); ++#ifdef PLAT_RK_DP_HDCP + case RK_SIP_HDCP_CONTROL: + SMC_RET1(handle, dp_hdcp_ctrl(x1)); + case RK_SIP_HDCP_KEY_DATA64: + x5 = read_ctx_reg(get_gpregs_ctx(handle), CTX_GPREG_X5); + x6 = read_ctx_reg(get_gpregs_ctx(handle), CTX_GPREG_X6); + SMC_RET1(handle, dp_hdcp_store_key(x1, x2, x3, x4, x5, x6)); ++#endif + default: + ERROR("%s: unhandled SMC (0x%x)\n", __func__, smc_fid); + SMC_RET1(handle, SMC_UNK); +diff --git a/plat/rockchip/rk3399/platform.mk b/plat/rockchip/rk3399/platform.mk +index 25c498da8..01577492d 100644 +--- a/plat/rockchip/rk3399/platform.mk ++++ b/plat/rockchip/rk3399/platform.mk +@@ -57,7 +57,6 @@ BL31_SOURCES += ${RK_GIC_SOURCES} \ + ${RK_PLAT_COMMON}/aarch64/platform_common.c \ + ${RK_PLAT_COMMON}/rockchip_sip_svc.c \ + ${RK_PLAT_SOC}/plat_sip_calls.c \ +- ${RK_PLAT_SOC}/drivers/dp/cdn_dp.c \ + ${RK_PLAT_SOC}/drivers/gpio/rk3399_gpio.c \ + ${RK_PLAT_SOC}/drivers/pmu/pmu.c \ + ${RK_PLAT_SOC}/drivers/pmu/pmu_fw.c \ +@@ -89,17 +88,21 @@ $(eval $(call add_define,RK3399M0FW)) + RK3399M0PMUFW=${BUILD_M0}/${PLAT_M0}pmu.bin + $(eval $(call add_define,RK3399M0PMUFW)) + ++ifdef PLAT_RK_DP_HDCP ++BL31_SOURCES += ${RK_PLAT_SOC}/drivers/dp/cdn_dp.c ++ + HDCPFW=${RK_PLAT_SOC}/drivers/dp/hdcp.bin + $(eval $(call add_define,HDCPFW)) + ++${BUILD_PLAT}/bl31/cdn_dp.o: CCACHE_EXTRAFILES=$(HDCPFW) ++${RK_PLAT_SOC}/drivers/dp/cdn_dp.c: $(HDCPFW) ++endif ++ + # CCACHE_EXTRAFILES is needed because ccache doesn't handle .incbin + export CCACHE_EXTRAFILES + ${BUILD_PLAT}/bl31/pmu_fw.o: CCACHE_EXTRAFILES=$(RK3399M0FW):$(RK3399M0PMUFW) + ${RK_PLAT_SOC}/drivers/pmu/pmu_fw.c: $(RK3399M0FW) + +-${BUILD_PLAT}/bl31/cdn_dp.o: CCACHE_EXTRAFILES=$(HDCPFW) +-${RK_PLAT_SOC}/drivers/dp/cdn_dp.c: $(HDCPFW) +- + $(eval $(call MAKE_PREREQ_DIR,${BUILD_M0},${BUILD_PLAT})) + .PHONY: $(RK3399M0FW) + $(RK3399M0FW): | ${BUILD_M0} +-- +2.20.1 + diff --git a/gnu/packages/patches/arm-trusted-firmware-optional-bin-generation.patch b/gnu/packages/patches/arm-trusted-firmware-optional-bin-generation.patch new file mode 100644 index 0000000000..b2b8a12e1d --- /dev/null +++ b/gnu/packages/patches/arm-trusted-firmware-optional-bin-generation.patch @@ -0,0 +1,86 @@ +From b02de4cb14ee9c2bfff53d36f0b7ec6a2065bc94 Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?Christoph=20M=C3=BCllner?= <christophm30@gmail.com> +Date: Wed, 24 Apr 2019 09:45:30 +0200 +Subject: [PATCH 1/2] build_macros: Add mechanism to prevent bin generation. +MIME-Version: 1.0 +Content-Type: text/plain; charset=UTF-8 +Content-Transfer-Encoding: 8bit + +On certain platforms it does not make sense to generate +TF-A binary images. For example a platform could make use of serveral +memory areas, which are non-continuous and the resulting binary +therefore would suffer from the padding-bytes. +Typically these platforms use the ELF image. + +This patch introduces a variable DISABLE_BIN_GENERATION, which +can be set to '1' in the platform makefile to prevent the binary +generation. + +Signed-off-by: Christoph Müllner <christophm30@gmail.com> +Change-Id: I62948e88bab685bb055fe6167d9660d14e604462 +--- + docs/user-guide.rst | 4 ++++ + make_helpers/build_macros.mk | 9 +++++++++ + make_helpers/defaults.mk | 3 +++ + 3 files changed, 16 insertions(+) + +diff --git a/docs/user-guide.rst b/docs/user-guide.rst +index 0848769b3..19919f112 100644 +--- a/docs/user-guide.rst ++++ b/docs/user-guide.rst +@@ -369,6 +369,10 @@ Common build options + - ``DEBUG``: Chooses between a debug and release build. It can take either 0 + (release) or 1 (debug) as values. 0 is the default. + ++- ``DISABLE_BIN_GENERATION``: Boolean option to disable the generation ++ of the binary image. If set to 1, then only the ELF image is built. ++ 0 is the default. ++ + - ``DYN_DISABLE_AUTH``: Provides the capability to dynamically disable Trusted + Board Boot authentication at runtime. This option is meant to be enabled only + for development platforms. ``TRUSTED_BOARD_BOOT`` flag must be set if this +diff --git a/make_helpers/build_macros.mk b/make_helpers/build_macros.mk +index 5d33954ad..2d41b2db1 100644 +--- a/make_helpers/build_macros.mk ++++ b/make_helpers/build_macros.mk +@@ -438,6 +438,11 @@ else + --script $(LINKERFILE) $(BUILD_DIR)/build_message.o \ + $(OBJS) $(LDPATHS) $(LIBWRAPPER) $(LDLIBS) $(BL_LIBS) + endif ++ifeq ($(DISABLE_BIN_GENERATION),1) ++ @${ECHO_BLANK_LINE} ++ @echo "Built $$@ successfully" ++ @${ECHO_BLANK_LINE} ++endif + + $(DUMP): $(ELF) + $${ECHO} " OD $$@" +@@ -451,7 +456,11 @@ $(BIN): $(ELF) + @${ECHO_BLANK_LINE} + + .PHONY: bl$(1) ++ifeq ($(DISABLE_BIN_GENERATION),1) ++bl$(1): $(ELF) $(DUMP) ++else + bl$(1): $(BIN) $(DUMP) ++endif + + all: bl$(1) + +diff --git a/make_helpers/defaults.mk b/make_helpers/defaults.mk +index be84f7791..dc797ed1f 100644 +--- a/make_helpers/defaults.mk ++++ b/make_helpers/defaults.mk +@@ -62,6 +62,9 @@ DEBUG := 0 + # Build platform + DEFAULT_PLAT := fvp + ++# Disable the generation of the binary image (ELF only). ++DISABLE_BIN_GENERATION := 0 ++ + # Enable capability to disable authentication dynamically. Only meant for + # development platforms. + DYN_DISABLE_AUTH := 0 +-- +2.20.1 + diff --git a/gnu/packages/patches/arm-trusted-firmware-rockchip-disable-binary.patch b/gnu/packages/patches/arm-trusted-firmware-rockchip-disable-binary.patch new file mode 100644 index 0000000000..8819a7cfad --- /dev/null +++ b/gnu/packages/patches/arm-trusted-firmware-rockchip-disable-binary.patch @@ -0,0 +1,73 @@ +From 42383dcf7db5debb9e183c7c5631974a4c2f91ea Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?Christoph=20M=C3=BCllner?= <christophm30@gmail.com> +Date: Wed, 24 Apr 2019 09:52:54 +0200 +Subject: [PATCH 2/2] rockchip: Disable binary generation for all SoCs. +MIME-Version: 1.0 +Content-Type: text/plain; charset=UTF-8 +Content-Transfer-Encoding: 8bit + +All supported Rockchip SoCs (RK3288, RK3328, RK3368 and RK3399) +have non-continuous memory areas in the linker script with a huge +gap between them. This results in extremely padded binary images +with a size of about 4 GiB. + +E.g. on the RK3399 we have the following memory areas (and base addresses): +RAM (0x1000), SRAM (0xFF8C0000), and PMUSRAM (0xFF3B0000). + +Consumers of the TF-A project (e.g. coreboot or U-Boot) therefore +use the ELF image instead, which has a size of a few hundred kBs. + +In order to prevent the generation of a huge and useless file, +this patch disables the binary generation for all affected Rockchip +SoCs. + +Signed-off-by: Christoph Müllner <christophm30@gmail.com> +Change-Id: I4ac65bdf1e598c3e1a59507897d183aee9a36916 +--- + plat/rockchip/rk3328/platform.mk | 2 ++ + plat/rockchip/rk3368/platform.mk | 2 ++ + plat/rockchip/rk3399/platform.mk | 2 ++ + 3 files changed, 6 insertions(+) + +diff --git a/plat/rockchip/rk3328/platform.mk b/plat/rockchip/rk3328/platform.mk +index 18b1b9419..01c5af6a2 100644 +--- a/plat/rockchip/rk3328/platform.mk ++++ b/plat/rockchip/rk3328/platform.mk +@@ -8,6 +8,8 @@ RK_PLAT := plat/rockchip + RK_PLAT_SOC := ${RK_PLAT}/${PLAT} + RK_PLAT_COMMON := ${RK_PLAT}/common + ++DISABLE_BIN_GENERATION := 1 ++ + include lib/libfdt/libfdt.mk + + PLAT_INCLUDES := -Idrivers/arm/gic/common/ \ +diff --git a/plat/rockchip/rk3368/platform.mk b/plat/rockchip/rk3368/platform.mk +index d1315fc58..4ec36ce06 100644 +--- a/plat/rockchip/rk3368/platform.mk ++++ b/plat/rockchip/rk3368/platform.mk +@@ -8,6 +8,8 @@ RK_PLAT := plat/rockchip + RK_PLAT_SOC := ${RK_PLAT}/${PLAT} + RK_PLAT_COMMON := ${RK_PLAT}/common + ++DISABLE_BIN_GENERATION := 1 ++ + include lib/libfdt/libfdt.mk + + PLAT_INCLUDES := -I${RK_PLAT_COMMON}/ \ +diff --git a/plat/rockchip/rk3399/platform.mk b/plat/rockchip/rk3399/platform.mk +index 101359856..25c498da8 100644 +--- a/plat/rockchip/rk3399/platform.mk ++++ b/plat/rockchip/rk3399/platform.mk +@@ -8,6 +8,8 @@ RK_PLAT := plat/rockchip + RK_PLAT_SOC := ${RK_PLAT}/${PLAT} + RK_PLAT_COMMON := ${RK_PLAT}/common + ++DISABLE_BIN_GENERATION := 1 ++ + include lib/libfdt/libfdt.mk + + PLAT_INCLUDES := -I${RK_PLAT_COMMON}/ \ +-- +2.20.1 + diff --git a/gnu/packages/patches/dav1d-aarch64-symbol-alignment.patch b/gnu/packages/patches/dav1d-aarch64-symbol-alignment.patch new file mode 100644 index 0000000000..a47adf9b05 --- /dev/null +++ b/gnu/packages/patches/dav1d-aarch64-symbol-alignment.patch @@ -0,0 +1,25 @@ +Ensure local debug symbols are aligned on AArch64. + +Taken from upstream: +https://code.videolan.org/videolan/dav1d/commit/a6228f47f0eebcdfebb1753a786e3e1654b51ea4 + +diff --git a/src/arm/64/ipred.S b/src/arm/64/ipred.S +index 41b3c1c..9513212 100644 +--- a/src/arm/64/ipred.S ++++ b/src/arm/64/ipred.S +@@ -2244,6 +2244,7 @@ L(ipred_cfl_ac_420_tbl): + .hword L(ipred_cfl_ac_420_tbl) - L(ipred_cfl_ac_420_w16) + .hword L(ipred_cfl_ac_420_tbl) - L(ipred_cfl_ac_420_w8) + .hword L(ipred_cfl_ac_420_tbl) - L(ipred_cfl_ac_420_w4) ++ .hword 0 + + L(ipred_cfl_ac_420_w16_tbl): + .hword L(ipred_cfl_ac_420_w16_tbl) - L(ipred_cfl_ac_420_w16_wpad0) +@@ -2432,6 +2433,7 @@ L(ipred_cfl_ac_422_tbl): + .hword L(ipred_cfl_ac_422_tbl) - L(ipred_cfl_ac_422_w16) + .hword L(ipred_cfl_ac_422_tbl) - L(ipred_cfl_ac_422_w8) + .hword L(ipred_cfl_ac_422_tbl) - L(ipred_cfl_ac_422_w4) ++ .hword 0 + + L(ipred_cfl_ac_422_w16_tbl): + .hword L(ipred_cfl_ac_422_w16_tbl) - L(ipred_cfl_ac_422_w16_wpad0) diff --git a/gnu/packages/patches/kodi-increase-test-timeout.patch b/gnu/packages/patches/kodi-increase-test-timeout.patch new file mode 100644 index 0000000000..8fb149ff9d --- /dev/null +++ b/gnu/packages/patches/kodi-increase-test-timeout.patch @@ -0,0 +1,18 @@ +Increase thread timeout to reduce flakiness. + +Taken from upstream: +https://github.com/xbmc/xbmc/commit/574b0182d8b641fd24029f372ebdcccc897123e2 + +diff --git a/xbmc/threads/test/TestEvent.cpp b/xbmc/threads/test/TestEvent.cpp +index 42fb8c2fc609..40e644c0ed3c 100644 +--- a/xbmc/threads/test/TestEvent.cpp ++++ b/xbmc/threads/test/TestEvent.cpp +@@ -484,7 +484,7 @@ TEST(TestEvent, GroupTimedWait) + EXPECT_TRUE(w3.result == NULL); + + // this should end given the wait is for only 50 millis +- EXPECT_TRUE(waitThread3.timed_join(MILLIS(100))); ++ EXPECT_TRUE(waitThread3.timed_join(MILLIS(200))); + + EXPECT_TRUE(!w3.waiting); + EXPECT_TRUE(w3.result == NULL); diff --git a/gnu/packages/patches/libmpeg2-arm-private-symbols.patch b/gnu/packages/patches/libmpeg2-arm-private-symbols.patch new file mode 100644 index 0000000000..7f88d65e21 --- /dev/null +++ b/gnu/packages/patches/libmpeg2-arm-private-symbols.patch @@ -0,0 +1,48 @@ +Set visibility of global symbols used in ARM specific assembly file to +internal. + +Taken from Debian: +https://salsa.debian.org/multimedia-team/mpeg2dec/blob/master/debian/patches/60_arm-private-symbols.patch + +--- mpeg2dec.orig/libmpeg2/motion_comp_arm_s.S ++++ mpeg2dec/libmpeg2/motion_comp_arm_s.S +@@ -23,7 +23,8 @@ + + @ ---------------------------------------------------------------- + .align +- .global MC_put_o_16_arm ++ .global MC_put_o_16_arm ++ .internal MC_put_o_16_arm + MC_put_o_16_arm: + @@ void func(uint8_t * dest, const uint8_t * ref, int stride, int height) + pld [r1] +@@ -83,7 +84,8 @@ MC_put_o_16_arm_align_jt: + + @ ---------------------------------------------------------------- + .align +- .global MC_put_o_8_arm ++ .global MC_put_o_8_arm ++ .internal MC_put_o_8_arm + MC_put_o_8_arm: + @@ void func(uint8_t * dest, const uint8_t * ref, int stride, int height) + pld [r1] +@@ -152,7 +154,8 @@ MC_put_o_8_arm_align_jt: + .endm + + .align +- .global MC_put_x_16_arm ++ .global MC_put_x_16_arm ++ .internal MC_put_x_16_arm + MC_put_x_16_arm: + @@ void func(uint8_t * dest, const uint8_t * ref, int stride, int height) + pld [r1] +@@ -244,7 +247,8 @@ MC_put_x_16_arm_align_jt: + + @ ---------------------------------------------------------------- + .align +- .global MC_put_x_8_arm ++ .global MC_put_x_8_arm ++ .internal MC_put_x_8_arm + MC_put_x_8_arm: + @@ void func(uint8_t * dest, const uint8_t * ref, int stride, int height) + pld [r1] diff --git a/gnu/packages/patches/libmpeg2-global-symbol-test.patch b/gnu/packages/patches/libmpeg2-global-symbol-test.patch new file mode 100644 index 0000000000..f6eb3c6bd7 --- /dev/null +++ b/gnu/packages/patches/libmpeg2-global-symbol-test.patch @@ -0,0 +1,63 @@ +Rewrite the public symbol check to verify the shared libraries, to check for +more things, and to avoid duplication; fixes make check on ARM + +Taken from Debian: +https://salsa.debian.org/multimedia-team/mpeg2dec/blob/master/debian/patches/61_global-symbol-test.patch + +--- mpeg2dec.orig/test/globals ++++ mpeg2dec/test/globals +@@ -1,4 +1,8 @@ + #!/bin/sh ++# TODO ++# - fix checking of .a libs; problem is that "nm -g --defined-only" lists ++# internal symbols; this can be solved by using objdump, but it's probably ++# good enough to just run the tests on the shared lib + + if test x"$srcdir" != x""; then + builddir="." # running from make check, but it does not define that +@@ -14,22 +18,30 @@ builddir=`cd $builddir;pwd` + + error=0 + +-bad_globals=`nm -g --defined-only $builddir/../libmpeg2/*.o |\ +- awk '{if ($3) print $3}' | grep -v '^_\?mpeg2_'` +- +-if test x"$bad_globals" != x""; then +- echo BAD GLOBAL SYMBOLS: +- for s in $bad_globals; do echo $s; done ++# check_bad_public_symbols <symbol prefix> <lib file> [<lib file>...] ++# ++# checks public symbols in shared libs: ++# - allow prefix_anything ++# - reject _prefixanything ++# - allow _anything ++# - reject anything else ++# ++# NB: skips missing files ++check_bad_public_symbols() { ++ symbols_prefix="$1" ++ shift ++ lib_files=`ls "$@" 2>/dev/null` ++ [ -z "$lib_files" ] && return ++ bad_globals=`nm -g --defined-only $lib_files | ++ awk '{if ($3) print $3}' | ++ sed -n "/^${symbols_prefix}_/ d; /^_${symbols_prefix}/ { p; d }; /^_/ d; p"` ++ [ -z "$bad_globals" ] && return + error=1 +-fi +- +-bad_globals=`nm -g --defined-only $builddir/../libmpeg2/convert/*.o |\ +- awk '{if ($3) print $3}' | grep -v '^_\?mpeg2convert_'` ++ echo BAD GLOBAL SYMBOLS in $lib_files: ++ echo "$bad_globals" ++} + +-if test x"$bad_globals" != x""; then +- echo BAD GLOBAL SYMBOLS: +- for s in $bad_globals; do echo $s; done +- error=1 +-fi ++check_bad_public_symbols mpeg2 $builddir/../libmpeg2/.libs/libmpeg2.so ++check_bad_public_symbols mpeg2convert $builddir/../libmpeg2/convert/.libs/libmpeg2convert.so + + exit $error diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm index b13caf37fe..5f99f8b752 100644 --- a/gnu/packages/pdf.scm +++ b/gnu/packages/pdf.scm @@ -200,10 +200,7 @@ When present, Poppler is able to correctly render CJK and Cyrillic text.") (substitute* "setup.py" ;; This check always fails, so disable it. (("if not check_qtxml\\(\\)") - "if True") - ;; Enable C++11, which is needed because of Qt5. - (("\\*\\*ext_args" line) - (string-append "extra_compile_args=['-std=gnu++11'], " line))) + "if True")) ;; We need to pass an extra flag here. This cannot be in ;; configure-flags because it should not be passed for the ;; installation phase. diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm index b30461e153..e9aaeb23c2 100644 --- a/gnu/packages/protobuf.scm +++ b/gnu/packages/protobuf.scm @@ -75,7 +75,7 @@ data in motion, or as a file format for data at rest.") (define-public protobuf (package (name "protobuf") - (version "3.5.1") + (version "3.10.0") (source (origin (method url-fetch) (uri (string-append "https://github.com/google/protobuf/releases/" @@ -83,7 +83,7 @@ data in motion, or as a file format for data at rest.") version ".tar.gz")) (sha256 (base32 - "14j0427ykjzrd9a66c2mpk0sjcccjlsx6q8ww6hzwb6sha3vm3f2")))) + "06xnqpsa79jrk3k55fsycnp7jac546299v7gdyx9yf4c5q81xfgz")))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib))) (outputs (list "out" @@ -112,9 +112,9 @@ yet extensible format. Google uses Protocol Buffers for almost all of its internal RPC protocols and file formats.") (license license:bsd-3))) -(define-public protobuf-next - (package (inherit protobuf) - (name "protobuf") +;; Tensorflow requires version 3.6 specifically. +(define-public protobuf-3.6 + (package/inherit protobuf (version "3.6.1") (source (origin (method url-fetch) @@ -125,6 +125,20 @@ internal RPC protocols and file formats.") (base32 "0a955bz59ihrb5wg7dwi12xajdi5pmz4bl0g147rbdwv393jwwxk")))))) +;; The 3.5 series are the last versions that do not require C++ 11. +(define-public protobuf-3.5 + (package/inherit + protobuf + (version "3.5.1") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/google/protobuf/releases/" + "download/v" version "/protobuf-cpp-" + version ".tar.gz")) + (sha256 + (base32 + "14j0427ykjzrd9a66c2mpk0sjcccjlsx6q8ww6hzwb6sha3vm3f2")))))) + ;; XXX Remove this old version when no other packages depend on it. (define-public protobuf-2 (package (inherit protobuf) @@ -141,7 +155,7 @@ internal RPC protocols and file formats.") (define-public protobuf-c (package (name "protobuf-c") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/protobuf-c/protobuf-c/" @@ -149,7 +163,7 @@ internal RPC protocols and file formats.") "/protobuf-c-" version ".tar.gz")) (sha256 (base32 - "0rr2kn7804cvhdm6lzz04gz76vy0fzj15dijbr17nv8x34x2sisi")))) + "0x4ybd9rfd878p2imz0hb8zxfd7l60vbdw7cg84dnysr9kqm3wjk")))) (build-system gnu-build-system) (inputs `(("protobuf" ,protobuf))) (native-inputs `(("pkg-config" ,pkg-config))) @@ -189,14 +203,14 @@ encoder in C++. The developer using protozero has to manually translate the (define-public python-protobuf (package (name "python-protobuf") - (version "3.5.2") + (version "3.10.0") (source (origin (method url-fetch) (uri (pypi-uri "protobuf" version)) (sha256 (base32 - "1q4b1m55w4gvcbzklbk8iylaii98n4in41k27d94w8ypbwlrm1q9")))) + "1zjq3qi0wgqi0fwxgqlgwvj9ri1m4kmnz3jnpd803lqc5k0vb0yv")))) (build-system python-build-system) (propagated-inputs `(("python-six" ,python-six))) @@ -210,10 +224,11 @@ mechanism for serializing structured data.") (define-public python2-protobuf (package-with-python2 python-protobuf)) -(define-public python-protobuf-next - (package (inherit python-protobuf) +;; For tensorflow. +(define-public python-protobuf-3.6 + (package/inherit python-protobuf (name "python-protobuf") - (version (package-version protobuf-next) ) + (version (package-version protobuf-3.6) ) (source (origin (method url-fetch) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index cd7cea244c..cc64070ed0 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -38,7 +38,7 @@ ;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com> ;;; Copyright © 2017, 2018 Adriano Peluso <catonano@gmail.com> ;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au> -;;; Copyright © 2017, 2018 Mathieu Othacehe <m.othacehe@gmail.com> +;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2017 José Miguel Sánchez García <jmi2k@openmailbox.org> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017, 2018 Kei Kebreau <kkebreau@posteo.net> @@ -910,10 +910,18 @@ some helpful Python 2 compatibility convenience methods.") (base32 "09z4d1jiasn7k1hs5af2ckmnrd0i1d1m04bhfjhv7z6svzfdwgg3")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; Do not run pylint plugin test, as astroid is an old + ;; unsupported version. + (invoke "pytest" "-v" "-k" "not test_pylint_plugin" + "verboselogs/tests.py")))))) (native-inputs `(("python-mock" ,python-mock) - ("python-astroid" ,python-astroid) - ("python-pylint" ,python-pylint))) + ("python-pytest" ,python-pytest))) (home-page "https://verboselogs.readthedocs.io") (synopsis "Verbose logging level for Python's logging module") (description @@ -5111,6 +5119,18 @@ child application and control it as if a human were typing commands.") them as the version argument or in a SCM managed file.") (license license:expat))) +;; Needed by python-lazy-object-proxy, remove on next update cycle. +(define-public python-setuptools-scm-3.3 + (package + (inherit python-setuptools-scm) + (version "3.3.3") + (source (origin + (method url-fetch) + (uri (pypi-uri "setuptools_scm" version)) + (sha256 + (base32 + "19cyndx23xmpbhz4qrwmfwsmnnaczd0dw7qg977ksq2dbvxy29dx")))))) + (define-public python2-setuptools-scm (package-with-python2 python-setuptools-scm)) @@ -10616,13 +10636,15 @@ docstring and colored output.") (define-public python-lazy-object-proxy (package (name "python-lazy-object-proxy") - (version "1.3.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (pypi-uri "lazy-object-proxy" version)) (sha256 (base32 - "0yha7q9bhw857fwaby785d63mffhngl9npwzlk9i0pwlkwvbx4gb")))) + "1wgl0fmddi0ind78a74yyk2qrr9pb5llvj1892cdpp6z6n6mn4zx")))) + (native-inputs + `(("python-setuptools-scm" ,python-setuptools-scm-3.3))) (build-system python-build-system) (home-page "https://github.com/ionelmc/python-lazy-object-proxy") (synopsis "Lazy object proxy for python") @@ -12524,18 +12546,19 @@ clone, while other processes access the original tree.") (define-public python-astroid (package (name "python-astroid") - (version "2.1.0") + (version "2.3.2") (source (origin (method url-fetch) (uri (pypi-uri "astroid" version)) (sha256 (base32 - "08hz675knh4294bancdapql392fmbjyimhbyrmfkz1ka7l035c1m")))) + "0crfhpblcy5a6nh694hc2073gw389f01yilamzqi34si2skgp8q9")))) (build-system python-build-system) (propagated-inputs `(("python-lazy-object-proxy" ,python-lazy-object-proxy) ("python-six" ,python-six) + ("python-typed-ast" ,python-typed-ast) ("python-wrapt" ,python-wrapt))) (native-inputs `(("python-dateutil" ,python-dateutil) @@ -12602,7 +12625,8 @@ builds partial trees by inspecting living objects.") ,python2-backports-functools-lru-cache) ("python2-enum34" ,python2-enum34) ("python2-singledispatch" ,python2-singledispatch) - ,@(package-propagated-inputs base)))))) + ,@(alist-delete "python-typed-ast" + (package-propagated-inputs base))))))) (define-public python-isort (package @@ -14721,14 +14745,16 @@ source bytes using the UTF-8 encoding and then rewrites Python 3.6 style (define-public python-typed-ast (package (name "python-typed-ast") - (version "1.3.5") + (version "1.4.0") (source (origin - (method url-fetch) - (uri (pypi-uri "typed-ast" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/python/typed_ast.git") + (commit version))) (sha256 - (base32 - "1m7pr6qpana3cvqwiw7mlvrgvmw27ch5mx1592572xhlki8g85ak")))) + (base32 "0l0hz809f7i356kmqkvfsaswiidb98j9hs9rrjnfawzqcbffzgyb")) + (file-name (git-file-name name version)))) (build-system python-build-system) (arguments `(#:modules ((guix build utils) diff --git a/gnu/packages/robotics.scm b/gnu/packages/robotics.scm index 389bb5a028..fbf10be366 100644 --- a/gnu/packages/robotics.scm +++ b/gnu/packages/robotics.scm @@ -106,7 +106,7 @@ hundred times faster than real-time.") (inputs `(("dashel" ,dashel) ("enki" ,enki) - ("protobuf" ,protobuf) ;for logging + ("protobuf" ,protobuf-3.5) ;for logging ("qtbase" ,qtbase) ("qtsvg" ,qtsvg) ("qttools" ,qttools) ;for libQt5Help, needed by "studio" diff --git a/gnu/packages/sagemath.scm b/gnu/packages/sagemath.scm index 43da5c636a..7615b37759 100644 --- a/gnu/packages/sagemath.scm +++ b/gnu/packages/sagemath.scm @@ -404,11 +404,7 @@ used as internal storage type for polynomial structures.") (string-append "INSTALL_DIR=" out)) ;; Sage renames the include directory, so we do it also. (("include/Lfunction") - "include/libLfunction") - ;; Add --std=c++11 to be compatible with the "auto" keyword - ;; introduced by lcalc-using-namespace-std.patch. - (("^#EXTRA= -pg") - "EXTRA=--std=c++11"))) + "include/libLfunction"))) #t)) (add-before 'install 'make-output-dirs (lambda* (#:key outputs #:allow-other-keys) diff --git a/gnu/packages/search.scm b/gnu/packages/search.scm index d786ad08d9..ca8a928e60 100644 --- a/gnu/packages/search.scm +++ b/gnu/packages/search.scm @@ -49,14 +49,14 @@ (define-public xapian (package (name "xapian") - (version "1.4.12") + (version "1.4.13") ;; Note: When updating Xapian, remember to update xapian-bindings below. (source (origin (method url-fetch) (uri (string-append "https://oligarchy.co.uk/xapian/" version "/xapian-core-" version ".tar.xz")) (sha256 - (base32 "0z5c1y9vp519h2x2igjq39v6j615nppry0wasd0xn4hphgd3d2jg")))) + (base32 "0z0k8902bz2ckdggikj5yz11ik2n8krmdwzvpqv60phcm3zzzy4k")))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib) ("util-linux" ,util-linux))) @@ -94,7 +94,7 @@ rich set of boolean query operators.") "/xapian-bindings-" version ".tar.xz")) (sha256 (base32 - "0j9awiiw9zf97r60m848absq43k37gghpyw7acxqjazfzd71fxvm")))) + "14jqm8mi55z4jxyi9qnnxdljli81zknsp2ja2yjx17hm28kmsnks")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--with-python3") diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3c69901a0a..4b1ba98e2f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -523,17 +523,17 @@ for reading and writing some dBase files.") (define-public r-kernsmooth (package (name "r-kernsmooth") - (version "2.23-15") + (version "2.23-16") (source (origin (method url-fetch) (uri (cran-uri "KernSmooth" version)) (sha256 (base32 - "1xhha8kw10jv8pv8b61hb5in9qiw3r2a9kdji3qlm991s4zd4wlb")))) + "1acrkbdn3a74y4dndkcdl1njnpfqz7gk3bsz03g8lfj8l7z53hmq")))) (properties `((upstream-name . "KernSmooth"))) (build-system r-build-system) - (inputs + (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/KernSmooth") (synopsis "Functions for kernel smoothing") @@ -1200,14 +1200,14 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "1mvpkp8cj30fwd4bwlz96x3cff7yzfbfz7iswmf77zl0a6122inh")))) + "1aax50wyrs4336zpf247l8wmp4spab2n70msziy1ip4gbjn26wa1")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -2610,13 +2610,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.9.700.2.0") + (version "0.9.800.1.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0g25w32dnqrvhnri8x4yxqawxd8qhn7w3m8d29nxxy0gybx3y8x9")))) + "1frg7y3fb571jf9dp1kkc75x0nxvw8j3qccsrm1brg5l1z2jmlaz")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) ;; All needed for vignettes @@ -3605,13 +3605,13 @@ persistent (on the file system).") (define-public r-r-rsp (package (name "r-r-rsp") - (version "0.43.1") + (version "0.43.2") (source (origin (method url-fetch) (uri (cran-uri "R.rsp" version)) (sha256 (base32 - "0i01p8jxc4j4zl2v2ykvvpfnm5hv650zj1wi1dh8hq0c98xi2yfr")))) + "128zqyvbq9hm9gy86jzhj609lkfw57vr24mdxgh46ncmx66ag4gj")))) (properties `((upstream-name . "R.rsp"))) (build-system r-build-system) (propagated-inputs @@ -3818,14 +3818,14 @@ It uses and relies on grid graphics and formal (S4) classes and methods.") (define-public r-purrr (package (name "r-purrr") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "purrr" version)) (sha256 (base32 - "0ccs78a2ylr60f3z0f7iywi8h1pwr8mz4ga78bs4pwgnwkclvir7")))) + "17lyys7dxjrwsfkq7a7hw65iy3qn3pp1sn70srdy64jf8adahc8g")))) (build-system r-build-system) (propagated-inputs `(("r-magrittr" ,r-magrittr) diff --git a/gnu/packages/telephony.scm b/gnu/packages/telephony.scm index 5d6f0ffed6..81e710a536 100644 --- a/gnu/packages/telephony.scm +++ b/gnu/packages/telephony.scm @@ -464,7 +464,7 @@ address of one of the participants.") (find-files "release/plugins" "\\.so$")))))))) (inputs `(("avahi" ,avahi) - ("protobuf" ,protobuf) + ("protobuf" ,protobuf-3.5) ("openssl" ,openssl) ("libsndfile" ,libsndfile) ("boost" ,boost) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index e30a4cbcb6..8f2c0eda78 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -315,6 +315,8 @@ a shared library and encoder and decoder command-line executables.") ;; because the SourceForge project is misconfigured. (uri (string-append "http://libmpeg2.sourceforge.net/files/" name "-" version ".tar.gz")) + (patches (search-patches "libmpeg2-arm-private-symbols.patch" + "libmpeg2-global-symbol-test.patch")) (sha256 (base32 "1m3i322n2fwgrvbs1yck7g5md1dbg22bhq5xdqmjpz5m7j4jxqny")))) @@ -1178,8 +1180,7 @@ videoformats depend on the configuration flags of ffmpeg.") ("xcb-util-keysyms" ,xcb-util-keysyms))) (arguments `(#:configure-flags - `("CXXFLAGS=-std=gnu++11" - "BUILDCC=gcc" + `("BUILDCC=gcc" ,(string-append "LDFLAGS=-Wl,-rpath -Wl," (assoc-ref %build-inputs "ffmpeg") "/lib")) ;needed for the tests @@ -2217,7 +2218,7 @@ from sites like Twitch.tv and pipes them into a video player of choice.") (build-system gnu-build-system) (arguments `(#:tests? #f ; no tests - #:make-flags '("CC=gcc" "CXX=g++ -std=gnu++11") + #:make-flags '("CC=gcc" "CXX=g++") #:configure-flags (list "--enable-gpl3" "--enable-gpl") @@ -2276,8 +2277,7 @@ tools, XML authoring components, and an extensible plug-in based API.") '(#:configure-flags (list (string-append "--with-udevdir=" (assoc-ref %outputs "out") - "/lib/udev") - "CXXFLAGS=-std=gnu++11"))) + "/lib/udev")))) (native-inputs `(("perl" ,perl) ("pkg-config" ,pkg-config))) @@ -3545,20 +3545,16 @@ transitions, and effects and then export your film to many common formats.") (define-public dav1d (package (name "dav1d") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) - (uri (list ;; The canonical download site. - (string-append "https://downloads.videolan.org/pub/videolan/" - "dav1d/" version "/dav1d-" version ".tar.xz") - - ;; Auto-generated tarballs from the Git repo? - (string-append "https://code.videolan.org/videolan/dav1d/-/" - "archive/" version "/dav1d-" version ".tar.bz2"))) + (uri (string-append "https://downloads.videolan.org/pub/videolan" + "/dav1d/" version "/dav1d-" version ".tar.xz")) + (patches (search-patches "dav1d-aarch64-symbol-alignment.patch")) (sha256 (base32 - "08yqml01lbcpflrshdpvn88jv3xd8gm559qikiwyrh41a3kb4lr5")))) + "1586k439fm8db9lsxxywm34iqibj5mw4xrppr4g2wqr0hjlhcbxn")))) (build-system meson-build-system) (native-inputs `(("nasm" ,nasm))) (home-page "https://code.videolan.org/videolan/dav1d") diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 3101f307cd..612074473b 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -4028,8 +4028,8 @@ CDF, Atom 0.3, and Atom 1.0 feeds.") (package-with-python2 python-feedparser)) (define-public guix-data-service - (let ((commit "8019d2e6878908f40cb6b047f60d2e4fd3c6712e") - (revision "3")) + (let ((commit "5e2bc7c6e920e1542ab8fde39dbddca443a7cbc8") + (revision "4")) (package (name "guix-data-service") (version (string-append "0.0.1-" revision "." (string-take commit 7))) @@ -4041,7 +4041,7 @@ CDF, Atom 0.3, and Atom 1.0 feeds.") (file-name (git-file-name name version)) (sha256 (base32 - "06xv43az1aklrdb5y0if17xdqc80qnfdlyjiww8zmv4m3qnvj607")))) + "0awfvps7k9bpg3gpgc93y401g7pjabx7mr9960vigad8vddhixqi")))) (build-system gnu-build-system) (arguments '(#:tests? #f ; TODO Tests require PostgreSQL diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm index 59f30116a3..d0216423e8 100644 --- a/gnu/packages/xml.scm +++ b/gnu/packages/xml.scm @@ -971,14 +971,14 @@ XSL-T processor. It also performs any necessary post-processing.") (define-public xmlsec (package (name "xmlsec") - (version "1.2.28") + (version "1.2.29") (source (origin (method url-fetch) (uri (string-append "https://www.aleksey.com/xmlsec/download/" "xmlsec1-" version ".tar.gz")) (sha256 (base32 - "1m12caglhyx08g8lh2sl3nkldlpryzdx2d572q73y3m33s0w9vhk")))) + "1arr50fvma01q2ix7g4k2c7lb8qcqjajn7wdc07r66b0jsxdxldi")))) (build-system gnu-build-system) (propagated-inputs ; according to xmlsec1.pc `(("libxml2" ,libxml2) |