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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-06-22 09:06:53 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-06-22 09:07:51 +0200 |
| commit | acba72b9146edf4b12aa3625ff2cdcd4cf513b6d (patch) | |
| tree | 0f18f368f41da5d2b15a916e8c49aeb312e90cb5 /gnu/packages | |
| parent | 0e0b5977b72c5bcd7926d6dcf1c0e8c8bfa7e1c2 (diff) | |
gnu: express: Update to 1.5.3.
* gnu/packages/bioinformatics.scm (express): Update to 1.5.3.
[source]: Fetch from Github.
[arguments]: Add phase "remove-update-check".
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 20 |
1 files changed, 13 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 95f8b16db3..a2d83e3acc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3050,16 +3050,16 @@ dynamic programming or a variety of heuristics.") (define-public express (package (name "express") - (version "1.5.1") + (version "1.5.3") (source (origin - (method url-fetch) - (uri - (string-append - "http://bio.math.berkeley.edu/eXpress/downloads/express-" - version "/express-" version "-src.tgz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/adarob/eXpress.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "03rczxd0gjp2l1jxcmjfmf5j94j77zqyxa6x063zsc585nj40n0c")))) + "18nb22n7x820fzjngf4qgyb3mspqkw7xyk7v7s5ps6wfrd8qwscb")))) (build-system cmake-build-system) (arguments `(#:tests? #f ;no "check" target @@ -3076,6 +3076,12 @@ dynamic programming or a variety of heuristics.") (("\\$\\{CMAKE_CURRENT_SOURCE_DIR\\}/\\.\\./bamtools/lib") (string-append (assoc-ref inputs "bamtools") "/lib")) (("libprotobuf.a") "libprotobuf.so")) + #t)) + (add-after 'unpack 'remove-update-check + (lambda _ + (substitute* "src/main.cpp" + (("#include \"update_check.h\"") "") + (("check_version\\(PACKAGE_VERSION\\);") "")) #t))))) (inputs `(("boost" ,boost) |