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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-06-01 12:57:22 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-06-01 12:57:22 +0200 |
| commit | b540e5e6bba6e0047864abcc3a6dfec46ff6cd32 (patch) | |
| tree | 4afa44ee77a2033faa0ba4b29d88c88f2d982fd1 /gnu/packages | |
| parent | 93c97bfffba7ca0126c03967fbe058354e24f84d (diff) | |
gnu: pigx-scrnaseq: Update to 1.1.9.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.9.
[arguments]: Remove 'autoreconf phase.
[native-inputs]: Remove autoconf and automake.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 18 |
1 files changed, 2 insertions, 16 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 92d92e7d02..931eea7022 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10679,7 +10679,7 @@ methylation and segmentation.") (define-public pigx-scrnaseq (package (name "pigx-scrnaseq") - (version "1.1.8") + (version "1.1.9") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_scrnaseq/" @@ -10687,23 +10687,11 @@ methylation and segmentation.") "/pigx_scrnaseq-" version ".tar.gz")) (sha256 (base32 - "1lc42hl8mz95kilh0z39s3wnv092mhm6vl2i394n0yfvdzk4f885")))) + "0adx7877c3lhlrzfid76i8bc829wcmzvrm0jx47gyid8mxqb7vqs")))) (build-system gnu-build-system) (arguments `(#:phases (modify-phases %standard-phases - (add-before 'bootstrap 'autoreconf - (lambda _ - ;; This was fixed in commit - ;; c4ac067438ae9312b5786a72e2bfb3d795e3ec8a, but there is no - ;; release with this fix. - (call-with-output-file "VERSION" - (lambda (port) (display ,version port))) - ;; https://github.com/BIMSBbioinfo/pigx_scrnaseq/issues/59 - (substitute* "m4/ax_r_package.m4" - (("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)") - "if(system.file(package=\"PKG\") == \"\")")) - (invoke "autoreconf" "-vif"))) (add-before 'configure 'set-additional-environment-variables (lambda _ ;; Needed because of loompy @@ -10752,8 +10740,6 @@ methylation and segmentation.") r-singlecellexperiment r-stringr r-yaml)) - (native-inputs - (list autoconf automake)) (home-page "https://bioinformatics.mdc-berlin.de/pigx/") (synopsis "Analysis pipeline for single-cell RNA sequencing experiments") (description |