gnu: Add ocaml-sqlite3.

* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
(ocaml4.07-sqlite3): Inherit from ocaml-sqlite3.
* gnu/packages/bioinformatics.scm (pplacer): Also use package-with-ocaml4.07
with ocaml-sqlite3.

2 files changed, 27 insertions, 14 deletions

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index df012c0df4..d9ff16e91e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13002,7 +13002,7 @@ let before_space s =
          ("ocaml-batteries" ,(package-with-ocaml4.07 ocaml-batteries))
          ("ocaml-camlzip" ,(package-with-ocaml4.07 camlzip))
          ("ocaml-csv" ,(package-with-ocaml4.07 ocaml-csv))
-         ("ocaml-sqlite3" ,ocaml4.07-sqlite3)
+         ("ocaml-sqlite3" ,(package-with-ocaml4.07 ocaml-sqlite3))
          ("ocaml-xmlm" ,(package-with-ocaml4.07 ocaml-xmlm))
          ("ocaml-mcl" ,(package-with-ocaml4.07 ocaml-mcl))
          ("ocaml-gsl" ,ocaml4.07-gsl-1)))
diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm
index 6a9151594b..854cc797ed 100644
--- a/gnu/packages/ocaml.scm
+++ b/gnu/packages/ocaml.scm
@@ -1959,10 +1959,10 @@ to operate on the result type available from OCaml 4.03 in the standard
 library.")
     (license license:isc)))
 
-(define-public ocaml4.07-sqlite3
+(define-public ocaml-sqlite3
   (package
-    (name "ocaml4.07-sqlite3")
-    (version "4.4.1")
+    (name "ocaml-sqlite3")
+    (version "5.0.2")
     (source
      (origin
        (method git-fetch)
@@ -1972,18 +1972,16 @@ library.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1536agm5fgcqysszhpd3kmw7lkc5n5ni7gmlyglrbvmnmrwf3av2"))))
+         "15mmq7ak5facpfawfrc6hjz211gli7jab52iqdsihfvh790xm55f"))))
     (build-system dune-build-system)
-    (arguments
-     `(#:ocaml ,ocaml-4.07
-       #:findlib ,ocaml4.07-findlib
-       #:dune ,ocaml4.07-dune))
+    (properties `((ocaml4.07-variant . ,(delay ocaml4.07-sqlite3))))
+    (propagated-inputs
+     `(("dune-configurator" ,dune-configurator)
+       ("ocaml-odoc" ,ocaml-odoc)))
     (native-inputs
-     `(("ocaml-base" ,(package-with-ocaml4.07 ocaml-base))
-       ("ocaml-stdio" ,(package-with-ocaml4.07 ocaml-stdio))
-       ("pkg-config" ,pkg-config)))
-    (inputs
-     `(("sqlite" ,sqlite)))
+     `(("ocaml-ppx-inline-test" ,ocaml-ppx-inline-test)
+       ("pkg-config" ,pkg-config)
+       ("sqlite" ,sqlite)))
     (home-page "https://mmottl.github.io/sqlite3-ocaml")
     (synopsis "SQLite3 Bindings for OCaml")
     (description
@@ -1995,6 +1993,21 @@ coexistence with the old (version 2) SQLite and its OCaml wrapper
 @code{ocaml-sqlite}.")
     (license license:expat)))
 
+(define-public ocaml4.07-sqlite3
+  (package-with-ocaml4.07
+   (package
+     (inherit ocaml-sqlite3)
+     (arguments
+      `(#:phases
+        (modify-phases %standard-phases
+         (add-before 'build 'chmod
+           (lambda _
+             (for-each (lambda (file) (chmod file #o644)) (find-files "." ".*"))
+             #t)))))
+     (propagated-inputs
+      `(("ocaml-odoc" ,ocaml-odoc)))
+     (properties '()))))
+
 (define-public ocaml-csv
   (package
     (name "ocaml-csv")