diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2023-09-12 12:26:41 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-09-12 12:28:32 +0200 |
| commit | 30ec6f2fb5bdac917df16d1efa122fad81518a0e (patch) | |
| tree | 36f1dff41ed319c6cfd83bd9a7bc3d02a25e6da3 /gnu | |
| parent | e2a7c227dea5b361e2ebdbba24b923d1922a79d0 (diff) | |
gnu: macs: Update to 2.2.9.1.
* gnu/packages/bioinformatics.scm (macs): Update to 2.2.9.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[native-inputs]: Move python-cython from here...
[inputs]: ...and python-numpy from here...
[propagated-inputs]: ...to here.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 20 |
1 files changed, 8 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9500751a96..0df5bbfad5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7023,7 +7023,7 @@ experiments.") (define-public macs (package (name "macs") - (version "2.2.7.1") + (version "2.2.9.1") (source (origin ;; The PyPi tarball does not contain tests. (method git-fetch) @@ -7033,7 +7033,7 @@ experiments.") (file-name (git-file-name name version)) (sha256 (base32 - "08zsgh65xbpv1md2s3wqmrk9g2mz6izmn59ryw5lbac54120p291")) + "10vwc09fq4nvbd39hax1949mvq2wvkgz0k3p2zqmqwq8hv9r5l0j")) (modules '((guix build utils))) ;; Remove files generated by Cython (snippet @@ -7048,21 +7048,17 @@ experiments.") ;; Python 3.10 is in fact more recent than 3.6. (substitute* "setup.py" (("float\\(sys.version\\[:3\\]\\)<3.6") "False")))))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments `(#:phases (modify-phases %standard-phases (add-before 'build 'set-HOME - (lambda _ (setenv "HOME" "/tmp"))) - (replace 'check - (lambda* (#:key tests? inputs outputs #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (invoke "pytest" "-v"))))))) - (inputs - (list python-numpy)) + (lambda _ (setenv "HOME" "/tmp")))))) + ;; Propagate these for use of macs as a library. + (propagated-inputs + (list python-cython python-numpy)) (native-inputs - (list python-cython python-pytest)) + (list python-pytest)) (home-page "https://github.com/macs3-project/MACS") (synopsis "Model based analysis for ChIP-Seq data") (description |