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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-10-21 12:57:43 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-10-21 23:06:45 +0200 |
| commit | a5b0038cbdfd8ad81472279089aaebc4270c683a (patch) | |
| tree | 248dca945ff48c35452f2e556c4ca33ff27bb294 /gnu | |
| parent | 7321920cd3c9c1d7532024dfcdb958cce54b6368 (diff) | |
gnu: Add python-dnaio.
* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6469e9e1a1..58b29e2a30 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1919,6 +1919,29 @@ files between different genome assemblies. It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.") (license license:gpl2+))) +(define-public python-dnaio + (package + (name "python-dnaio") + (version "0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "dnaio" version)) + (sha256 + (base32 + "0f16m7hdlm0fz1n7y5asy0v9ghyrq17ni1p9iybq22ddzyd49r27")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython) + ("python-pytest" ,python-pytest) + ("python-xopen" ,python-xopen))) + (home-page "https://github.com/marcelm/dnaio/") + (synopsis "Read FASTA and FASTQ files efficiently") + (description + "dnaio is a Python library for fast parsing of FASTQ and also FASTA +files. The code was previously part of the cutadapt tool.") + (license license:expat))) + (define-public cutadapt (package (name "cutadapt") |