diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2019-08-16 14:56:37 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-08-16 15:07:22 +0200 |
| commit | c586f427b4831b9b492e5b900b2226e898b8fcfa (patch) | |
| tree | eeb0c1ddcec87c5e6651509cabb8bac114a83a1d /guix | |
| parent | 4cc5e5204b503afb4536a1e93e2fd7a9f57f12bf (diff) | |
build-system/r: bioconductor-uri: Take optional package type.
* guix/build-system/r.scm (bioconductor-uri): Take optional TYPE argument to
return annotation or experiment URLs.
Diffstat (limited to 'guix')
| -rw-r--r-- | guix/build-system/r.scm | 20 |
1 files changed, 14 insertions, 6 deletions
diff --git a/guix/build-system/r.scm b/guix/build-system/r.scm index e7214155be..dd2a9fe8de 100644 --- a/guix/build-system/r.scm +++ b/guix/build-system/r.scm @@ -47,14 +47,22 @@ available via the first URI, the second URI points to the archived version." (string-append "mirror://cran/src/contrib/Archive/" name "/" name "_" version ".tar.gz"))) -(define (bioconductor-uri name version) +(define* (bioconductor-uri name version #:optional type) "Return a URI string for the R package archive on Bioconductor for the release corresponding to NAME and VERSION." - (list (string-append "https://bioconductor.org/packages/release/bioc/src/contrib/" - name "_" version ".tar.gz") - ;; TODO: use %bioconductor-version from (guix import cran) - (string-append "https://bioconductor.org/packages/3.9/bioc/src/contrib/Archive/" - name "_" version ".tar.gz"))) + (let ((type-url-part (match type + ('annotation "/data/annotation") + ('experiment "/data/experiment") + (_ "/bioc")))) + (list (string-append "https://bioconductor.org/packages/release" + type-url-part + "/src/contrib/" + name "_" version ".tar.gz") + ;; TODO: use %bioconductor-version from (guix import cran) + (string-append "https://bioconductor.org/packages/3.9" + type-url-part + "/src/contrib/Archive/" + name "_" version ".tar.gz")))) (define %r-build-system-modules ;; Build-side modules imported by default. |