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| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7f188a4115..3572b605c6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8837,6 +8837,40 @@ factors for each cell, along with the usual metadata for genes and libraries.") (license license:gpl3))) +(define-public r-scuttle + (package + (name "r-scuttle") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "scuttle" version)) + (sha256 + (base32 + "1k8q3wzq6f6j6wkjp9fy9j214rv98kyvcxnpavk6blqgaxjqwdr6")))) + (properties `((upstream-name . "scuttle"))) + (build-system r-build-system) + (propagated-inputs + `(("r-beachmat" ,r-beachmat) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-delayedarray" ,r-delayedarray) + ("r-delayedmatrixstats" ,r-delayedmatrixstats) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-s4vectors" ,r-s4vectors) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/scuttle") + (synopsis "Single-cell RNA-Seq analysis utilities") + (description + "This package provides basic utility functions for performing single-cell +analyses, focusing on simple normalization, quality control and data +transformations. It also provides some helper functions to assist development +of other packages.") + (license license:gpl3))) + (define-public r-scater (package (name "r-scater") |