diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 90 |
1 files changed, 45 insertions, 45 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index befc2a9420..33f66ce8be 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -748,51 +748,6 @@ annotations.") "This is a manifest package for Illumina's EPIC methylation arrays.") (license license:artistic2.0))) -;; This is a CRAN package, but it depends on Bioconductor packages. -(define-public r-nmf - (package - (name "r-nmf") - (version "0.23.0") - (source - (origin - (method url-fetch) - (uri (cran-uri "NMF" version)) - (sha256 - (base32 - "0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g")))) - (properties `((upstream-name . "NMF"))) - (build-system r-build-system) - (propagated-inputs - `(("r-cluster" ,r-cluster) - ("r-biobase" ,r-biobase) - ("r-biocmanager" ,r-biocmanager) - ("r-bigmemory" ,r-bigmemory) ; suggested - ("r-synchronicity" ,r-synchronicity) ; suggested - ("r-colorspace" ,r-colorspace) - ("r-digest" ,r-digest) - ("r-doparallel" ,r-doparallel) - ("r-foreach" ,r-foreach) - ("r-ggplot2" ,r-ggplot2) - ("r-gridbase" ,r-gridbase) - ("r-pkgmaker" ,r-pkgmaker) - ("r-rcolorbrewer" ,r-rcolorbrewer) - ("r-registry" ,r-registry) - ("r-reshape2" ,r-reshape2) - ("r-rngtools" ,r-rngtools) - ("r-stringr" ,r-stringr))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "http://renozao.github.io/NMF") - (synopsis "Algorithms and framework for nonnegative matrix factorization") - (description - "This package provides a framework to perform Non-negative Matrix -Factorization (NMF). The package implements a set of already published -algorithms and seeding methods, and provides a framework to test, develop and -plug new or custom algorithms. Most of the built-in algorithms have been -optimized in C++, and the main interface function provides an easy way of -performing parallel computations on multicore machines.") - (license license:gpl2+))) - (define-public r-do-db (package (name "r-do-db") @@ -1289,6 +1244,51 @@ the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.") (license license:gpl2+))) +;; This is a CRAN package, but it depends on Bioconductor packages. +(define-public r-nmf + (package + (name "r-nmf") + (version "0.23.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "NMF" version)) + (sha256 + (base32 + "0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g")))) + (properties `((upstream-name . "NMF"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cluster" ,r-cluster) + ("r-biobase" ,r-biobase) + ("r-biocmanager" ,r-biocmanager) + ("r-bigmemory" ,r-bigmemory) ; suggested + ("r-synchronicity" ,r-synchronicity) ; suggested + ("r-colorspace" ,r-colorspace) + ("r-digest" ,r-digest) + ("r-doparallel" ,r-doparallel) + ("r-foreach" ,r-foreach) + ("r-ggplot2" ,r-ggplot2) + ("r-gridbase" ,r-gridbase) + ("r-pkgmaker" ,r-pkgmaker) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-registry" ,r-registry) + ("r-reshape2" ,r-reshape2) + ("r-rngtools" ,r-rngtools) + ("r-stringr" ,r-stringr))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "http://renozao.github.io/NMF") + (synopsis "Algorithms and framework for nonnegative matrix factorization") + (description + "This package provides a framework to perform Non-negative Matrix +Factorization (NMF). The package implements a set of already published +algorithms and seeding methods, and provides a framework to test, develop and +plug new or custom algorithms. Most of the built-in algorithms have been +optimized in C++, and the main interface function provides an easy way of +performing parallel computations on multicore machines.") + (license license:gpl2+))) + (define-public r-affycomp (package (name "r-affycomp") |