diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 29 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
2 files changed, 29 insertions, 29 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 329bacb190..44b81b0704 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -807,6 +807,35 @@ region sets and other genomic features.") "This package provides functions for plotting genomic data.") (license license:artistic2.0))) +(define-public r-qvalue + (package + (name "r-qvalue") + (version "2.14.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "qvalue" version)) + (sha256 + (base32 + "0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-reshape2" ,r-reshape2))) + (home-page "http://github.com/jdstorey/qvalue") + (synopsis "Q-value estimation for false discovery rate control") + (description + "This package takes a list of p-values resulting from the simultaneous +testing of many hypotheses and estimates their q-values and local @dfn{false +discovery rate} (FDR) values. The q-value of a test measures the proportion +of false positives incurred when that particular test is called significant. +The local FDR measures the posterior probability the null hypothesis is true +given the test's p-value. Various plots are automatically generated, allowing +one to make sensible significance cut-offs. The software can be applied to +problems in genomics, brain imaging, astrophysics, and data mining.") + ;; Any version of the LGPL. + (license license:lgpl3+))) + (define-public r-diffbind (package (name "r-diffbind") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 26fcc3a41a..e29f2a7a39 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10293,35 +10293,6 @@ quality controls, normalization, visualization, and further analysis are also provided.") (license license:artistic2.0))) -(define-public r-qvalue - (package - (name "r-qvalue") - (version "2.14.1") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "qvalue" version)) - (sha256 - (base32 - "0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc")))) - (build-system r-build-system) - (propagated-inputs - `(("r-ggplot2" ,r-ggplot2) - ("r-reshape2" ,r-reshape2))) - (home-page "http://github.com/jdstorey/qvalue") - (synopsis "Q-value estimation for false discovery rate control") - (description - "This package takes a list of p-values resulting from the simultaneous -testing of many hypotheses and estimates their q-values and local @dfn{false -discovery rate} (FDR) values. The q-value of a test measures the proportion -of false positives incurred when that particular test is called significant. -The local FDR measures the posterior probability the null hypothesis is true -given the test's p-value. Various plots are automatically generated, allowing -one to make sensible significance cut-offs. The software can be applied to -problems in genomics, brain imaging, astrophysics, and data mining.") - ;; Any version of the LGPL. - (license license:lgpl3+))) - (define-public r-hdf5array (package (name "r-hdf5array") |