diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 | ||||
| -rw-r--r-- | gnu/packages/cran.scm | 31 |
2 files changed, 33 insertions, 31 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 71037a86e2..8463e5874d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4766,6 +4766,39 @@ provided as a matrix which can be used as an offset for different expression of gene-level counts.") (license license:gpl2+))) +;; This is a CRAN package, but it depends on a Bioconductor package. +(define-public r-valr + (package + (name "r-valr") + (version "0.6.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "valr" version)) + (sha256 + (base32 + "0dd41irvibh6rwi52bw4zg4m7wpyihlp1kdkb8fdji3csw2fiz4k")))) + (build-system r-build-system) + (propagated-inputs + (list r-broom + r-dplyr + r-ggplot2 + r-rcpp + r-readr + r-rlang + r-rtracklayer ;bioconductor package + r-stringr + r-tibble)) + (native-inputs + (list r-knitr)) + (home-page "https://github.com/rnabioco/valr") + (synopsis "Genome interval arithmetic in R") + (description + "This package enables you to read and manipulate genome intervals and +signals. It provides functionality similar to command-line tool suites within +R, enabling interactive analysis and visualization of genome-scale data.") + (license license:expat))) + (define-public r-variantannotation (package (name "r-variantannotation") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 448ac5b724..7abd3c5233 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15677,37 +15677,6 @@ can also be used to join clusters obtained from affinity propagation. Various plotting functions are available for analyzing clustering results.") (license license:gpl2+))) -(define-public r-valr - (package - (name "r-valr") - (version "0.6.3") - (source - (origin - (method url-fetch) - (uri (cran-uri "valr" version)) - (sha256 - (base32 - "1lzdlw0mw06rymyjzwf4i8rx1z6zxpwxxqfsc9ggqlnhq6bfhy93")))) - (build-system r-build-system) - (propagated-inputs - (list r-broom - r-dplyr - r-ggplot2 - r-rcpp - r-readr - r-rlang - r-stringr - r-tibble)) - (native-inputs - (list r-knitr)) - (home-page "https://github.com/rnabioco/valr") - (synopsis "Genome interval arithmetic in R") - (description - "This package enables you to read and manipulate genome intervals and -signals. It provides functionality similar to command-line tool suites within -R, enabling interactive analysis and visualization of genome-scale data.") - (license license:expat))) - (define-public r-rematch2 (package (name "r-rematch2") |