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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7a1c8cc8e3..85d4e5a185 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11957,6 +11957,30 @@ options), bedgraph, links (represented as arcs), and Hi-C matrices. pyGenomeTracks can make plots with or without Hi-C data.") (license license:gpl3+))) +(define-public python-iced + (package + (name "python-iced") + (version "0.5.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "iced" version)) + (sha256 + (base32 + "1avcjmpyyvhgbj5qca4l70ipiz7j3xmcw9p6rd9c06j99faa0r71")))) + (build-system python-build-system) + (arguments `(#:tests? #false)) ; there are none + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ("python-scipy" ,python-scipy) + ("python-scikit-learn" ,python-scikit-learn))) + (home-page "https://github.com/hiclib/iced") + (synopsis "ICE normalization") + (description "This is a package for normalizing Hi-C contact counts +efficiently.") + (license license:bsd-3))) + (define-public python-hic2cool (package (name "python-hic2cool") |