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| -rw-r--r-- | gnu/packages/bioconductor.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2ace372c58..b8535250f9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2317,6 +2317,33 @@ reproducible gene expression signatures capable of accurately distinguishing tumor samples from healthy controls.") (license license:artistic2.0))) +(define-public r-aseb + (package + (name "r-aseb") + (version "1.40.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASEB" version)) + (sha256 + (base32 + "1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p")))) + (properties `((upstream-name . "ASEB"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/ASEB") + (synopsis "Predict acetylated lysine sites") + (description + "ASEB is an R package to predict lysine sites that can be acetylated by a +specific @dfn{KAT} (K-acetyl-transferases) family. Lysine acetylation is a +well-studied posttranslational modification on kinds of proteins. About four +thousand lysine acetylation sites and over 20 lysine KATs have been +identified. However, which KAT is responsible for a given protein or lysine +site acetylation is mostly unknown. In this package, we use a +@dfn{GSEA}-like (Gene Set Enrichment Analysis) method to make predictions. +GSEA method was developed and successfully used to detect coordinated +expression changes and find the putative functions of the long non-coding +RNAs.") + (license license:gpl3+))) + (define-public r-asgsca (package (name "r-asgsca") |