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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8d7210d4ef..3ec1273cd4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14333,6 +14333,39 @@ intra and interspecies module preservation statistics between different networks.") (license license:gpl3))) +(define-public r-bionet + (package + (name "r-bionet") + (version "1.52.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BioNet" version)) + (sha256 + (base32 + "15rk1jfv4h1mxvr5bs0qmq6fdnza7zcmksigqxb46fs7f6znr3yi")))) + (properties `((upstream-name . "BioNet"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-graph" ,r-graph) + ("r-igraph" ,r-igraph) + ("r-rbgl" ,r-rbgl))) + (home-page "http://bioconductor.org/packages/release/bioc/html/BioNet.html") + (synopsis "Functional analysis of biological networks") + (description + "This package provides functions for the integrated analysis of +protein-protein interaction networks and the detection of functional modules. +Different datasets can be integrated into the network by assigning p-values of +statistical tests to the nodes of the network. E.g. p-values obtained from +the differential expression of the genes from an Affymetrix array are assigned +to the nodes of the network. By fitting a beta-uniform mixture model and +calculating scores from the p-values, overall scores of network regions can be +calculated and an integer linear programming algorithm identifies the maximum +scoring subnetwork.") + (license license:gpl2+))) + (define-public r-tximeta (package (name "r-tximeta") |