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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 026fb436e3..9cf7a522d1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8909,6 +8909,46 @@ tab-delimited (tabix) files.") "This package models a RESTful service as if it were a nested R list.") (license license:artistic2.0))) +(define-public r-rtcgatoolbox + (package + (name "r-rtcgatoolbox") + (version "2.30.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "RTCGAToolbox" version)) + (sha256 + (base32 + "03p5rgjzc1265q60jkvk92vhcib5wdnv6bz997r70q9c39y03wm5")))) + (properties `((upstream-name . "RTCGAToolbox"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-data-table + r-delayedarray + r-genomeinfodb + r-genomicranges + r-httr + r-raggedexperiment + r-rcircos + r-rcurl + r-rjsonio + r-rvest + r-s4vectors + r-stringr + r-summarizedexperiment + r-tcgautils)) + (native-inputs (list r-knitr)) + (home-page "http://mksamur.github.io/RTCGAToolbox/") + (synopsis "Export TCGA Firehose data") + (description + "Managing data from large scale projects such as The Cancer Genome +Atlas (TCGA) for further analysis is an important and time consuming step for +research projects. Several efforts, such as Firehose project, make TCGA +pre-processed data publicly available via web services and data portals but it +requires managing, downloading and preparing the data for following steps. +This package provides an extensible R based data client for Firehose +pre-processed data.") + (license license:gpl2))) + (define-public r-rtracklayer (package (name "r-rtracklayer") |