diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ef34b99649..e2b4f6ea7f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -297,7 +297,7 @@ provided by UCSC (mm9, July 2007) and stored in Biostrings objects.") `(("r-bsgenome" ,r-bsgenome) ("r-bsgenome-mmusculus-ucsc-mm9" ,r-bsgenome-mmusculus-ucsc-mm9))) - (home-page "http://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9.masked/") + (home-page "https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9.masked/") (synopsis "Full masked genome sequences for Mouse") (description "This package provides full genome sequences for Mus musculus (Mouse) as @@ -1400,7 +1400,7 @@ problems in genomics, brain imaging, astrophysics, and data mining.") ("r-s4vectors" ,r-s4vectors) ("r-summarizedexperiment" ,r-summarizedexperiment) ("r-systempiper" ,r-systempiper))) - (home-page "http://bioconductor.org/packages/DiffBind") + (home-page "https://bioconductor.org/packages/DiffBind") (synopsis "Differential binding analysis of ChIP-Seq peak data") (description "This package computes differentially bound sites from multiple @@ -1429,7 +1429,7 @@ occupancy (overlap) analysis and plotting functions.") ("r-rsamtools" ,r-rsamtools) ("r-genomicalignments" ,r-genomicalignments) ("r-rtracklayer" ,r-rtracklayer))) - (home-page "http://bioconductor.org/packages/RIPSeeker") + (home-page "https://bioconductor.org/packages/RIPSeeker") (synopsis "Identifying protein-associated transcripts from RIP-seq experiments") (description @@ -1458,7 +1458,7 @@ processing to visualization and annotation.") ("r-biocgenerics" ,r-biocgenerics) ("r-biobase" ,r-biobase) ("r-mass" ,r-mass))) - (home-page "http://bioconductor.org/packages/multtest") + (home-page "https://bioconductor.org/packages/multtest") (synopsis "Resampling-based multiple hypothesis testing") (description "This package can do non-parametric bootstrap and permutation @@ -1569,7 +1569,7 @@ determining dependencies between variables, code improvement suggestions.") ("r-seqinr" ,r-seqinr) ("r-summarizedexperiment" ,r-summarizedexperiment) ("r-venndiagram" ,r-venndiagram))) - (home-page "http://bioconductor.org/packages/ChIPpeakAnno") + (home-page "https://bioconductor.org/packages/ChIPpeakAnno") (synopsis "Peaks annotation from ChIP-seq and ChIP-chip experiments") (description "The package includes functions to retrieve the sequences around the peak, @@ -1594,7 +1594,7 @@ enrichedGO (addGeneIDs).") (build-system r-build-system) (propagated-inputs `(("r-limma" ,r-limma))) - (home-page "http://bioconductor.org/packages/marray") + (home-page "https://bioconductor.org/packages/marray") (synopsis "Exploratory analysis for two-color spotted microarray data") (description "This package contains class definitions for two-color spotted microarray data. It also includes functions for data input, diagnostic plots, @@ -1615,7 +1615,7 @@ normalization and quality checking.") (propagated-inputs `(("r-biobase" ,r-biobase) ("r-marray" ,r-marray))) - (home-page "http://bioconductor.org/packages/CGHbase") + (home-page "https://bioconductor.org/packages/CGHbase") (synopsis "Base functions and classes for arrayCGH data analysis") (description "This package contains functions and classes that are needed by the @code{arrayCGH} packages.") @@ -1638,7 +1638,7 @@ the @code{arrayCGH} packages.") ("r-impute" ,r-impute) ("r-dnacopy" ,r-dnacopy) ("r-snowfall" ,r-snowfall))) - (home-page "http://bioconductor.org/packages/CGHcall") + (home-page "https://bioconductor.org/packages/CGHcall") (synopsis "Base functions and classes for arrayCGH data analysis") (description "This package contains functions and classes that are needed by @code{arrayCGH} packages.") @@ -1667,7 +1667,7 @@ the @code{arrayCGH} packages.") ("r-matrixstats" ,r-matrixstats) ("r-r-utils" ,r-r-utils) ("r-rsamtools" ,r-rsamtools))) - (home-page "http://bioconductor.org/packages/QDNAseq") + (home-page "https://bioconductor.org/packages/QDNAseq") (synopsis "Quantitative DNA sequencing for chromosomal aberrations") (description "The genome is divided into non-overlapping fixed-sized bins, number of sequence reads in each counted, adjusted with a simultaneous |