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Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 55df9bf7d1..f1af34844f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9618,6 +9618,34 @@ handling of existing population-level data for the purpose of flexibly defining LD blocks.") (license license:artistic2.0))) +;; This is a CRAN package, but it depends on r-snpstats, which is a +;; Bioconductor package. +(define-public r-ldheatmap + (package + (name "r-ldheatmap") + (version "1.0-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "LDheatmap" version)) + (sha256 + (base32 + "1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7")))) + (properties `((upstream-name . "LDheatmap"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genetics" ,r-genetics) + ("r-rcpp" ,r-rcpp) + ("r-snpstats" ,r-snpstats))) + (home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html") + (synopsis "Graphical display of pairwise linkage disequilibria between SNPs") + (description + "This package provides tools to produce a graphical display, as a heat +map, of measures of pairwise linkage disequilibria between SNPs. Users may +optionally include the physical locations or genetic map distances of each SNP +on the plot.") + (license license:gpl3))) + (define-public r-pathview (package (name "r-pathview") |