diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 38 |
1 files changed, 35 insertions, 3 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1ea5e47321..a7af5c42ce 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015-2023 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015-2024 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017, 2018, 2020, 2021 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com> @@ -7324,13 +7324,13 @@ global-scaling and full-quantile normalization.") (define-public r-edger (package (name "r-edger") - (version "4.0.3") + (version "4.0.5") (source (origin (method url-fetch) (uri (bioconductor-uri "edgeR" version)) (sha256 (base32 - "0sz46pwa1bsqrff2igswfhhj1fcwzn34zrlawy4fnb58z48kccb0")))) + "16cghh83v14jdq5n6xkm3jxj87n6l6zrxjgqdwb2ffgc26vkpb7w")))) (properties `((upstream-name . "edgeR"))) (build-system r-build-system) (propagated-inputs @@ -10510,6 +10510,38 @@ expression information. The package functions as a wrapper for Startrac and powerTCR R packages.") (license license:gpl2))) +(define-public r-scrnaseq + (package + (name "r-scrnaseq") + (version "2.16.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "scRNAseq" version + 'experiment)) + (sha256 + (base32 "0dbh3sqq7lkkdf7vls5qg7fbn6y74c7hsigb4d69pvk934ll88aw")))) + (properties `((upstream-name . "scRNAseq"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-annotationhub + r-biocgenerics + r-ensembldb + r-experimenthub + r-genomicfeatures + r-genomicranges + r-s4vectors + r-singlecellexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/scRNAseq") + (synopsis "Collection of public single-cell RNA-seq datasets") + (description + "This package contains gene-level counts for a collection of public +@code{scRNA-seq} datasets, provided as @code{SingleCellExperiment} objects +with cell- and gene-level metadata.") + (license license:cc0))) + (define-public r-scry (package (name "r-scry") |