diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 10 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ccfda627f3..bcb7eba48f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -623,15 +623,20 @@ results. The FASTX-Toolkit tools perform some of these preprocessing tasks.") "13jaykc3y1x8y5nn9j8ljnb79s5y51kyxz46hdmvvjj6qhyympmf")))) (build-system cmake-build-system) (arguments - `(;; There is no test target, although there is a directory containing - ;; test data and scripts (launched by flexbar_validate.sh). - #:tests? #f - #:configure-flags (list + `(#:configure-flags (list (string-append "-DFLEXBAR_BINARY_DIR=" (assoc-ref %outputs "out") "/bin/")) #:phases - (alist-delete 'install %standard-phases))) + (alist-replace + 'check + (lambda* (#:key outputs #:allow-other-keys) + (setenv "PATH" (string-append + (assoc-ref outputs "out") "/bin:" + (getenv "PATH"))) + (chdir "../flexbar_v2.5_src/test") + (zero? (system* "bash" "flexbar_validate.sh"))) + (alist-delete 'install %standard-phases)))) (inputs `(("tbb" ,tbb) ("zlib" ,zlib))) |