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-rw-r--r--gnu/packages/bioinformatics.scm47
1 files changed, 0 insertions, 47 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 76236929de..bc483e6f13 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10549,53 +10549,6 @@ views. High-level plots include sequence fragment length, edge-linked
interval to data view, mismatch pileup, and several splicing summaries.")
(license license:artistic2.0)))
-(define-public r-gqtlbase
- (package
- (name "r-gqtlbase")
- (version "1.21.1")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "gQTLBase" version))
- (sha256
- (base32
- "0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
- (properties `((upstream-name . "gQTLBase")))
- (build-system r-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- ;; This is an upstream bug.
- (add-after 'unpack 'fix-imports
- (lambda _
- (substitute* "NAMESPACE"
- ((".*maxffmode.*") "")
- (("importFrom\\(ff,.*") "import(ff)\n"))
- #t)))))
- (propagated-inputs
- `(("r-batchjobs" ,r-batchjobs)
- ("r-bbmisc" ,r-bbmisc)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-bit" ,r-bit)
- ("r-doparallel" ,r-doparallel)
- ("r-ff" ,r-ff)
- ("r-ffbase" ,r-ffbase)
- ("r-foreach" ,r-foreach)
- ("r-genomicfiles" ,r-genomicfiles)
- ("r-genomicranges" ,r-genomicranges)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-s4vectors" ,r-s4vectors)
- ("r-summarizedexperiment" ,r-summarizedexperiment)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/gQTLBase")
- (synopsis "Infrastructure for eQTL, mQTL and similar studies")
- (description
- "The purpose of this package is to simplify the storage and interrogation
-of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
-and more.")
- (license license:artistic2.0)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))