1 files changed, 0 insertions, 54 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f363d64550..b2d10457fe 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7387,60 +7387,6 @@ includes software to
 ")
       (license license:cc0))))
 
-(define-public r-systempiper
-  (package
-    (name "r-systempiper")
-    (version "1.24.3")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (bioconductor-uri "systemPipeR" version))
-       (sha256
-        (base32
-         "0ffazyl2q9plbhwlxi04s3fvnli6qj95n7bkjc21535bbi08xfki"))))
-    (properties `((upstream-name . "systemPipeR")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-annotate" ,r-annotate)
-       ("r-assertthat" ,r-assertthat)
-       ("r-batchtools" ,r-batchtools)
-       ("r-biostrings" ,r-biostrings)
-       ("r-deseq2" ,r-deseq2)
-       ("r-dot" ,r-dot)
-       ("r-edger" ,r-edger)
-       ("r-genomicfeatures" ,r-genomicfeatures)
-       ("r-genomicranges" ,r-genomicranges)
-       ("r-ggplot2" ,r-ggplot2)
-       ("r-go-db" ,r-go-db)
-       ("r-gostats" ,r-gostats)
-       ("r-iranges" ,r-iranges)
-       ("r-limma" ,r-limma)
-       ("r-magrittr" ,r-magrittr)
-       ("r-pheatmap" ,r-pheatmap)
-       ("r-rjson" ,r-rjson)
-       ("r-rsamtools" ,r-rsamtools)
-       ("r-rsvg" ,r-rsvg)
-       ("r-shortread" ,r-shortread)
-       ("r-stringr" ,r-stringr)
-       ("r-summarizedexperiment" ,r-summarizedexperiment)
-       ("r-yaml" ,r-yaml)
-       ("r-variantannotation" ,r-variantannotation)))
-    (native-inputs
-     `(("r-knitr" ,r-knitr)))
-    (home-page "https://github.com/tgirke/systemPipeR")
-    (synopsis "Next generation sequencing workflow and reporting environment")
-    (description
-     "This R package provides tools for building and running automated
-end-to-end analysis workflows for a wide range of @dfn{next generation
-sequence} (NGS) applications such as RNA-Seq, ChIP-Seq, VAR-Seq and Ribo-Seq.
-Important features include a uniform workflow interface across different NGS
-applications, automated report generation, and support for running both R and
-command-line software, such as NGS aligners or peak/variant callers, on local
-computers or compute clusters.  Efficient handling of complex sample sets and
-experimental designs is facilitated by a consistently implemented sample
-annotation infrastructure.")
-    (license license:artistic2.0)))
-
 (define-public r-grohmm
   (package
     (name "r-grohmm")