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-rw-r--r--gnu/packages/cran.scm199
1 files changed, 140 insertions, 59 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a076a52640..8d7425e4c1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015-2023 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015-2024 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
@@ -35,7 +35,7 @@
;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
;;; Copyright © 2021 Marcel Schilling <marcel.schilling@uni-luebeck.de>
;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net>
-;;; Copyright © 2022, 2023 Navid Afkhami <navid.afkhami@mdc-berlin.de>
+;;; Copyright © 2022-2024 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
;;;
;;; This file is part of GNU Guix.
@@ -454,6 +454,27 @@ match datasets quickly. It also contains functions for various cosmological
calculations.")
(license license:gpl3)))
+(define-public r-cetcolor
+ (package
+ (name "r-cetcolor")
+ (version "0.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "cetcolor" version))
+ (sha256
+ (base32 "0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"))))
+ (properties `((upstream-name . "cetcolor")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/coatless-rpkg/cetcolor")
+ (synopsis "CET perceptually uniform color maps")
+ (description
+ "This package provides a collection of perceptually uniform color maps
+made by Peter Kovesi (2015) \"Good Colour Maps: How to Design Them\"
+<arXiv:1509.03700> at the Centre for Exploration Targeting (CET).")
+ (license license:cc-by-sa4.0)))
+
;; The package sources include multiple non-minified JavaScript files and the
;; v5.1.0 variant of d3.js. The d3.js file is not minified.
(define-public r-chromomap
@@ -1474,6 +1495,44 @@ matrix decomposition, sparse principal components analysis, and sparse
canonical correlation analysis.")
(license license:gpl2+)))
+(define-public r-rpresto
+ (package
+ (name "r-rpresto")
+ (version "1.4.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "RPresto" version))
+ (sha256
+ (base32 "1q8c3h328iwscnayxj8qc71s2hkqdqwnpf38kn3zz3ks66qzjf8c"))))
+ (properties `((upstream-name . "RPresto")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-bit64
+ r-dbi
+ r-dbplyr
+ r-dplyr
+ r-httr
+ r-jsonlite
+ r-lifecycle
+ r-lubridate
+ r-openssl
+ r-progress
+ r-purrr
+ r-rlang
+ r-stringi
+ r-tibble
+ r-vctrs))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/prestodb/RPresto")
+ (synopsis "DBI connector to Presto")
+ (description
+ "This package implements a DBI compliant interface to
+@url{https://prestodb.io/, Presto}, a distributed SQL query engine for running
+interactive analytic queries against data sources of all sizes ranging from
+gigabytes to petabytes.")
+ (license license:bsd-3)))
+
(define-public r-prettydoc
(package
(name "r-prettydoc")
@@ -2533,14 +2592,14 @@ scale-sensitive information.")
(define-public r-ggvenndiagram
(package
(name "r-ggvenndiagram")
- (version "1.5.0")
+ (version "1.5.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggVennDiagram" version))
(sha256
(base32
- "0ngvvmz2mxh4v98wg3xqpmz1p1cpk3qsdvszcjzb1yhhway211a5"))))
+ "0hzjbpd3f3zn169s5nvnv7b4wlrwdn3r0pk0vgkdnhchl75g0qni"))))
(properties `((upstream-name . "ggVennDiagram")))
(build-system r-build-system)
(propagated-inputs
@@ -2651,13 +2710,13 @@ respecting the grammar of its graphics paradigm.")
(define-public r-ggside
(package
(name "r-ggside")
- (version "0.2.3")
+ (version "0.3.0")
(source (origin
(method url-fetch)
(uri (cran-uri "ggside" version))
(sha256
(base32
- "0qj564rqxw8fn5h00wwmkvk6p3x60r64gpvxw9yrb5lvcykgsj8q"))))
+ "0mx6j9wi54inklmyydcqm0ahbx0b6c6y4sfh2awqsbgwigc3056p"))))
(properties `((upstream-name . "ggside")))
(build-system r-build-system)
(propagated-inputs
@@ -2708,14 +2767,14 @@ organisms via the @code{g:Profiler} toolkit.")
(define-public r-gprofiler2
(package
(name "r-gprofiler2")
- (version "0.2.2")
+ (version "0.2.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "gprofiler2" version))
(sha256
(base32
- "1zbfvpb4qqj6vipz0ps4pyy14h6rc4jaqfa8q4zrbhi5vvw9805r"))))
+ "1klmg0zj5kr663dzgfzpy1yn161znmjcjq8pl3rahjh2lwaahbmh"))))
(properties `((upstream-name . "gprofiler2")))
(build-system r-build-system)
(propagated-inputs
@@ -3914,13 +3973,13 @@ scraping tasks, inspired by libraries like @code{BeautifulSoup}.")
(define-public r-secretbase
(package
(name "r-secretbase")
- (version "0.2.0")
+ (version "0.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "secretbase" version))
(sha256
- (base32 "1z0ddzdimma8rgd47fn5mma09d5c7vrl5b7gdlvfk8l047yihyb6"))))
+ (base32 "1wgbk16by9w933cff5ybb2sa0ndgj3sv9ahr2r1843vgqiyvx2xi"))))
(properties `((upstream-name . "secretbase")))
(build-system r-build-system)
(home-page "https://shikokuchuo.net/secretbase/")
@@ -4069,14 +4128,14 @@ same time tries to group instances from the same class together.")
(define-public r-callr
(package
(name "r-callr")
- (version "3.7.4")
+ (version "3.7.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "callr" version))
(sha256
(base32
- "1cspwxqmfpdvlklyvvdwpvbifjp7nm703jp1q2hg48zgqd2kdak9"))))
+ "0b277fvjglnqrjmsm4ilhqrp9sjag0r9mxls2h9v1m94ff7ix88q"))))
(build-system r-build-system)
(propagated-inputs
(list r-processx r-r6))
@@ -6812,14 +6871,14 @@ on (non-orthogonal) variable vectors in scatterplots and biplots.")
(define-public r-shape
(package
(name "r-shape")
- (version "1.4.6")
+ (version "1.4.6.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "shape" version))
(sha256
(base32
- "0yqbrrx2ywmfl99s6d1n6jblc63k1mxbiqyv8y0kq8jws1g3w45r"))))
+ "1912znpk85j8c01s4m2f7x8rcqwski8b5n7g70cczmkzk47vvya3"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/shape")
(synopsis "Functions for plotting graphical shapes")
@@ -6852,14 +6911,14 @@ validation and filtering on the values, making options invisible or private.")
(define-public r-circlize
(package
(name "r-circlize")
- (version "0.4.15")
+ (version "0.4.16")
(source
(origin
(method url-fetch)
(uri (cran-uri "circlize" version))
(sha256
(base32
- "1iswb7dy08as3pbzxvhx5qlsbnwvp79nwg8m158nfz7y2d9xa0nn"))))
+ "0rqbcmmp4h1jjl0y59bzn6k8kywjdqwvp0ajkqxd21j9f33k5p0n"))))
(build-system r-build-system)
(propagated-inputs
(list r-colorspace r-globaloptions r-shape))
@@ -6904,13 +6963,13 @@ graphics packages that comes with the base installation.")
(define-public r-ctrdata
(package
(name "r-ctrdata")
- (version "1.17.1")
+ (version "1.17.2")
(source (origin
(method url-fetch)
(uri (cran-uri "ctrdata" version))
(sha256
(base32
- "0vb6nxhms66p90lh8ky693k7hchi5fbxxf8lnjcj4vhc0c5ijxns"))))
+ "0xsi3yc08gg9h5zh9h9r2d2ixv36f6wblmkcv51h9nfmawjyd8f8"))))
(properties `((upstream-name . "ctrdata")))
(build-system r-build-system)
(propagated-inputs
@@ -13349,14 +13408,14 @@ those searches and pull data into their R sessions.")
(define-public r-renv
(package
(name "r-renv")
- (version "1.0.3")
+ (version "1.0.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "renv" version))
(sha256
(base32
- "1d2y1yks34dg862zcxx03dak1h2gikis6mabmws2srja2hr18nlq"))))
+ "0jfrkxslx1bw4b2akkp12bgvpfc58dh2vrm91hgb1xa5xydai7j6"))))
(properties `((upstream-name . "renv")))
(build-system r-build-system)
(native-inputs
@@ -14156,14 +14215,14 @@ references and Rd files.")
(define-public r-officer
(package
(name "r-officer")
- (version "0.6.4")
+ (version "0.6.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
- "1mhkb2k9l0fp7xxhx69h1cxyh8gnlpwr5rjiw25s7rp1czwmyjk5"))))
+ "1lzpabpdrwx3331b9qn43376r25bzgph1j9gbxzqjhzr1h871cpb"))))
(build-system r-build-system)
(propagated-inputs
(list r-openssl r-r6 r-ragg r-uuid r-xml2 r-zip))
@@ -14282,14 +14341,14 @@ or missing responses.")
(define-public r-acdm
(package
(name "r-acdm")
- (version "1.0.4.2")
+ (version "1.0.4.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "ACDm" version))
(sha256
(base32
- "00i33b76gqllyc6ywwwrgyjvxfspqb3jf52b9sjaazlfwgn5xyjf"))))
+ "0g89827az5mnllp6l71znbvwxzygb8nvnmsv6x052w2ajhd16v7v"))))
(properties `((upstream-name . "ACDm")))
(build-system r-build-system)
(propagated-inputs
@@ -14481,13 +14540,13 @@ tidyverse workflow.")
(define-public r-nodbi
(package
(name "r-nodbi")
- (version "0.10.1")
+ (version "0.10.2")
(source (origin
(method url-fetch)
(uri (cran-uri "nodbi" version))
(sha256
(base32
- "180zydrq9wr53y0nd5v1z86f00v49m4xlam91ykc6jy4s7xvamz1"))))
+ "1pznlnln0p55qqwy22h9m79ddf3wgnx3vaxx2q39wvgqwj0kk1b0"))))
(properties `((upstream-name . "nodbi")))
(build-system r-build-system)
(propagated-inputs
@@ -14498,6 +14557,7 @@ tidyverse workflow.")
r-stringi
r-uuid
r-v8))
+ (native-inputs (list r-knitr))
(home-page "https://docs.ropensci.org/nodbi/")
(synopsis "NoSQL database connector")
(description
@@ -15521,14 +15581,14 @@ Models\" (Hastie and Tibshirani, 1990).")
(define-public r-superlearner
(package
(name "r-superlearner")
- (version "2.0-28.1")
+ (version "2.0-29")
(source
(origin
(method url-fetch)
(uri (cran-uri "SuperLearner" version))
(sha256
(base32
- "19kb4shfhj5aigjm1ljmlvr0jmgcbd6yl4gl3wfddy0nk2wi2bvm"))))
+ "0g1baz8jakgfwdh5bd9hrg1nm4ljpnxiiy5pmf00d27ld7wh6sr3"))))
(properties `((upstream-name . "SuperLearner")))
(build-system r-build-system)
(propagated-inputs
@@ -15786,13 +15846,13 @@ Processing of very large files is supported.")
(define-public r-mosaic
(package
(name "r-mosaic")
- (version "1.9.0")
+ (version "1.9.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "mosaic" version))
(sha256
- (base32 "1dydqawljv5l9lmhdrhmr7wh3q1c2mnc61gc99jr0jbb1bmls327"))))
+ (base32 "0l7h3zg5izr5xxqy1sngz6fzbwdffzljnjmfbshzzbl4x80f5lwl"))))
(build-system r-build-system)
(propagated-inputs
(list r-dplyr
@@ -17289,14 +17349,14 @@ effects models and Bayesian models.")
(define-public r-ggeffects
(package
(name "r-ggeffects")
- (version "1.4.0")
+ (version "1.5.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggeffects" version))
(sha256
(base32
- "1r9mbfcanwh2f617fgxnz3gijgpcjxvwzvpd7z8dg30rcm3ajb5r"))))
+ "0yczz34rn4sikwzqpm3w47zwm201mv4mljrcgpb50is06g3l7azk"))))
(build-system r-build-system)
(propagated-inputs
(list r-insight))
@@ -17625,14 +17685,14 @@ User credentials are shared with command line git through the
(define-public r-usethis
(package
(name "r-usethis")
- (version "2.2.2")
+ (version "2.2.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "usethis" version))
(sha256
(base32
- "0imy9izchr9xzc5wrr91ydfr4jifv8lsqx712zkx0vxfi6kw3n6r"))))
+ "1cyy1k5iansg63ziph4w76kzl59dgmam7m2wp6sz9d93bjcrh34d"))))
(build-system r-build-system)
(propagated-inputs
(list r-cli
@@ -18057,14 +18117,14 @@ using C++ code and of the OpenMP API.")
(define-public r-afex
(package
(name "r-afex")
- (version "1.3-0")
+ (version "1.3-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "afex" version))
(sha256
(base32
- "0cqr3vv4aapg8ckhrkwqhs5qvzl8zla147fvhd5wb2020yhpdqpq"))))
+ "1a1ilqn5xz7kkiwwaqi911b1cf9zc78l9my0fvjq3l73hrzgnr2a"))))
(build-system r-build-system)
;; This is needed for the vignette builder
(arguments
@@ -23973,6 +24033,27 @@ releases/download/v0.10.1/mathquill-0.10.1.tgz")
authoring books and technical documents with R Markdown.")
(license license:gpl3)))
+(define-public r-options
+ (package
+ (name "r-options")
+ (version "0.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "options" version))
+ (sha256
+ (base32 "0pprbp2pxvgh120f8dahswws44gpdm4f4nlq3h3nvqrlhnspwnb8"))))
+ (properties `((upstream-name . "options")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://dgkf.github.io/options/")
+ (synopsis "Simple, consistent package options")
+ (description
+ "This package provides simple mechanisms for defining and interpreting
+package options. It provides helpers for interpreting environment variables,
+global options, defining default values and more.")
+ (license license:expat)))
+
(define-public r-optparse
(package
(name "r-optparse")
@@ -24610,14 +24691,14 @@ sets of URLs.")
(define-public r-ggforce
(package
(name "r-ggforce")
- (version "0.4.1")
+ (version "0.4.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggforce" version))
(sha256
(base32
- "0wqq8l7lq96k4w0vq12jcg7clvgia8s35jjbqq1s0py4cgxijhml"))))
+ "1a2i1rl27yqh8kxjpphwcv05p19l2aw07q9gxl4x8iv8xpkb0if1"))))
(build-system r-build-system)
(propagated-inputs
(list r-cli
@@ -25519,14 +25600,14 @@ colored by the number of neighboring points. This is useful to visualize the
(define-public r-arrow
(package
(name "r-arrow")
- (version "14.0.0.2")
+ (version "14.0.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "arrow" version))
(sha256
(base32
- "1dwap9lap0hac0bhi8ajz06n9ccjdyfr5s153k1lxfgicqnsaf3i"))))
+ "1l1ninmq6mbqm7cckcy0qw4f20fkrixrykcqkh24bszg514r9af5"))))
(properties `((upstream-name . "arrow")))
(build-system r-build-system)
(inputs
@@ -25807,13 +25888,13 @@ code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.")
(define-public r-sccore
(package
(name "r-sccore")
- (version "1.0.4")
+ (version "1.0.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "sccore" version))
(sha256
- (base32 "11l7xl1ylzmda4i2p1b08a43pvciin2i2sas2n3cj1gmamflkji3"))))
+ (base32 "12jljngm0v75zp0zka1zdrn6pvxvqy7qpakr7vzazvq1vvjd5qlg"))))
(properties `((upstream-name . "sccore")))
(build-system r-build-system)
(propagated-inputs
@@ -30049,14 +30130,14 @@ number embedded in the file rather than the file extension.")
(define-public r-imager
(package
(name "r-imager")
- (version "0.45.2")
+ (version "0.45.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "imager" version))
(sha256
(base32
- "0mmzp55j1svlaa0lfmmaz8hijlkbk0wkv2craxhc6gyx0g5qp129"))))
+ "0vrv7m9b9w8xjqa9w17xvrmpl403476zr0l9wqdp9ir6ssvnaf2f"))))
(properties `((upstream-name . "imager")))
(build-system r-build-system)
(inputs
@@ -32221,14 +32302,14 @@ well as Ravand and Robitzsch (2015).")
(define-public r-tam
(package
(name "r-tam")
- (version "4.1-4")
+ (version "4.2-21")
(source
(origin
(method url-fetch)
(uri (cran-uri "TAM" version))
(sha256
(base32
- "0b81d0g4j94yrfzj019jffxrk1aw24iscddp60kjbkrl5p7qy38g"))))
+ "0s6mygm3sypjd393f7hsxslqwqp2s1hihb5iv8z8dhc95vj845qd"))))
(properties `((upstream-name . "TAM")))
(build-system r-build-system)
(propagated-inputs
@@ -32570,19 +32651,19 @@ recommendations for developers.")
(define-public r-loo
(package
(name "r-loo")
- (version "2.6.0")
+ (version "2.7.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "loo" version))
(sha256
- (base32 "040jk0zmpljq3ayd87bjy5vwwfy49im6kylp6z4wnqisypyn1nk6"))))
+ (base32 "0dnbbflglm7b29vr11rfrawnys9s3rl4h00h6xh9smjyalqz6r3n"))))
(properties `((upstream-name . "loo")))
(build-system r-build-system)
(inputs
(list pandoc))
(propagated-inputs
- (list r-checkmate r-matrixstats))
+ (list r-checkmate r-matrixstats r-posterior))
(native-inputs
(list r-knitr))
(home-page "https://mc-stan.org/loo/")
@@ -34254,14 +34335,14 @@ Kemeny distance and correlation coefficient.")
(define-public r-fastshap
(package
(name "r-fastshap")
- (version "0.1.0")
+ (version "0.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "fastshap" version))
(sha256
(base32
- "112hc585aryzc5pgvr3qaa7arlx2h2sj9jlq9xha3nncyzqkh7c6"))))
+ "1j6bnkv4q8n85xlvzm5p6p4yg8wdp6an6skbvdif5g9c376hzqb2"))))
(properties `((upstream-name . "fastshap")))
(build-system r-build-system)
(propagated-inputs
@@ -35898,14 +35979,14 @@ prediction of kriging models.")
(define-public r-dials
(package
(name "r-dials")
- (version "1.2.0")
+ (version "1.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "dials" version))
(sha256
(base32
- "1zj8f47jzgaydp3cff96w0kx1gm208vyq3f77p3g59nc01r0wri4"))))
+ "0xrvvz4pkzmjsizjqfcvpn6f1cl9yp56lyc2iw8vcvwa18gb6szf"))))
(properties `((upstream-name . "dials")))
(build-system r-build-system)
(propagated-inputs
@@ -38577,14 +38658,14 @@ to read the latter.")
(define-public r-readtext
(package
(name "r-readtext")
- (version "0.90")
+ (version "0.91")
(source
(origin
(method url-fetch)
(uri (cran-uri "readtext" version))
(sha256
(base32
- "01hscqmjb3fz4iqqgi0l2s1z48a53a25jnsxb0cdd631c97alqrh"))))
+ "0bzaq0vx6c83i4xf7p9zwka7h7jbv1qfy6w4v3kljx30hl048dpn"))))
(properties `((upstream-name . "readtext")))
(build-system r-build-system)
(propagated-inputs
@@ -38640,14 +38721,14 @@ and formatted text files with additional meta-data, such including @code{.csv},
(define-public r-lwgeom
(package
(name "r-lwgeom")
- (version "0.2-13")
+ (version "0.2-14")
(source
(origin
(method url-fetch)
(uri (cran-uri "lwgeom" version))
(sha256
(base32
- "0rqw2nhac832b9v2hdz6wwc51iykh86x5qrq0azlibr9q242i0ph"))))
+ "174jpsri9xpr9zb5hvzqhbhnajqw3aa38ajy1skl7ky8vgvnrnr6"))))
(properties `((upstream-name . "lwgeom")))
(build-system r-build-system)
(inputs
@@ -38745,14 +38826,14 @@ supply the workflow to create thematic maps. This package also facilitates
(define-public r-rtweet
(package
(name "r-rtweet")
- (version "1.2.1")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "rtweet" version))
(sha256
(base32
- "18ynravc5vz7ywm1n7ww48gx06dndcishl6lq8nqajxsjwiphq3r"))))
+ "1w41a1a5mgg06gvs468vrg9pax2nrnkiqhwllxmkk0i7s15gvi42"))))
(properties `((upstream-name . "rtweet")))
(build-system r-build-system)
(propagated-inputs
generated by cgit v1.2.3 (git 2.47.1) at 2025-04-08 13:44:24 +0000