diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 28 |
1 files changed, 21 insertions, 7 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index ba46937f9a..d3f3539e26 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -41,6 +41,7 @@ ;;; Copyright © 2020 B. Wilson <elaexuotee@wilsonb.com> ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com> +;;; Copyright © 2020 Martin Becze <mjbecze@riseup.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -306,13 +307,13 @@ programming language.") (define-public units (package (name "units") - (version "2.19") + (version "2.21") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/units/units-" version ".tar.gz")) (sha256 (base32 - "0mk562g7dnidjgfgvkxxpvlba66fh1ykmfd9ylzvcln1vxmi6qj2")))) + "1bybhqs4yrly9myb5maz3kdmf8k4fhk2m1d5cbcryn40z6lq0gkc")))) (build-system gnu-build-system) (inputs `(("readline" ,readline) @@ -2470,7 +2471,18 @@ scientific applications modeled by partial differential equations.") (uri (pypi-uri "petsc4py" version)) (sha256 (base32 - "1rm1qj5wlkhxl39by9n78lh3gbmii31wsnb8j1rr5hvfr5xgbx2q")))) + "1rm1qj5wlkhxl39by9n78lh3gbmii31wsnb8j1rr5hvfr5xgbx2q")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Ensure source file is regenerated in the build phase. + (delete-file "src/petsc4py.PETSc.c") + ;; Remove legacy GC code. See + ;; https://bitbucket.org/petsc/petsc4py/issues/125. + (substitute* "src/PETSc/cyclicgc.pxi" + ((".*gc_refs.*") "" ) + ((".*PyGC_Head.*") "")) + #t)))) (build-system python-build-system) (arguments `(#:phases @@ -2482,6 +2494,8 @@ scientific applications modeled by partial differential equations.") #t)) (add-before 'check 'mpi-setup ,%openmpi-setup)))) + (native-inputs + `(("python-cython" ,python-cython))) (inputs `(("petsc" ,petsc-openmpi) ("python-numpy" ,python-numpy))) @@ -2895,14 +2909,14 @@ easy-to-write markup language for mathematics.") (define-public superlu (package (name "superlu") - (version "5.2.1") + (version "5.2.2") (source (origin (method url-fetch) (uri (string-append "https://portal.nersc.gov/project/sparse/superlu/" "superlu_" version ".tar.gz")) (sha256 - (base32 "0qzlb7cd608q62kyppd0a8c65l03vrwqql6gsm465rky23b6dyr8")) + (base32 "13520vk6fqspyl22cq4ak2jh3rlmhja4czq56j75fdx65fkk80s7")) (modules '((guix build utils))) (snippet ;; Replace the non-free implementation of MC64 with a stub adapted @@ -4703,7 +4717,7 @@ as equations, scalars, vectors, and matrices.") (define-public z3 (package (name "z3") - (version "4.8.8") + (version "4.8.9") (home-page "https://github.com/Z3Prover/z3") (source (origin (method git-fetch) @@ -4712,7 +4726,7 @@ as equations, scalars, vectors, and matrices.") (file-name (git-file-name name version)) (sha256 (base32 - "1rn538ghqwxq0v8i6578j8mflk6fyv0cp4hjfqynzvinjbps56da")))) + "1hnbzq10d23drd7ksm3c1n2611c3kd0q0yxgz8y78zaafwczvwxx")))) (build-system gnu-build-system) (arguments `(#:imported-modules ((guix build python-build-system) |