diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 801 |
1 files changed, 334 insertions, 467 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 4b2ed02902..7f8764b672 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -53,7 +53,7 @@ ;;; Copyright © 2018, 2019, 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2018, 2019 Clément Lassieur <clement@lassieur.org> -;;; Copyright © 2018, 2019, 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2018, 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2018 Luther Thompson <lutheroto@gmail.com> ;;; Copyright © 2018 Vagrant Cascadian <vagrant@debian.org> ;;; Copyright © 2015, 2018 Pjotr Prins <pjotr.guix@thebird.nl> @@ -669,12 +669,7 @@ implementation for the Telegram Bot API.") `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - ;; Extend PYTHONPATH so the built package will be found. - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-p" "no:logging") - #t))))) + (invoke "pytest" "-p" "no:logging")))))) (home-page "https://github.com/borntyping/python-colorlog") (synopsis "Log formatting with colors for python") (description "The @code{colorlog.ColoredFormatter} is a formatter for use @@ -1048,15 +1043,16 @@ by @code{binstar}, @code{binstar-build}, and @code{chalmers}.") (version "2.9.0") (source (origin - (method url-fetch) - (uri (pypi-uri "Babel" version)) - (sha256 - (base32 - "018yg7g2pa6vjixx1nx41cfispgfi0azzp0a1chlycbj8jsil0ys")))) + (method url-fetch) + (uri (pypi-uri "Babel" version)) + (sha256 + (base32 + "018yg7g2pa6vjixx1nx41cfispgfi0azzp0a1chlycbj8jsil0ys")))) (build-system python-build-system) (native-inputs `(("python-freezegun" ,python-freezegun) - ("python-pytest" ,python-pytest))) + ("python-pytest" ,python-pytest) + ("tzdata" ,tzdata-for-tests))) (propagated-inputs `(("python-pytz" ,python-pytz))) (arguments @@ -1064,7 +1060,7 @@ by @code{binstar}, @code{binstar-build}, and @code{chalmers}.") (replace 'check (lambda _ (invoke "pytest" "-vv")))))) - (home-page "http://babel.pocoo.org/") + (home-page "https://babel.pocoo.org/") (synopsis "Tools for internationalizing Python applications") (description @@ -1116,7 +1112,7 @@ and verifies that it matches the intended target hostname.") (build-system python-build-system) (native-inputs `(("python-coverage" ,python-coverage) - ("python-hypothesis" ,python-hypothesis-5.23) ; use_true_random=... from >=5.19.0 + ("python-hypothesis" ,python-hypothesis) ("python-pre-commit" ,python-pre-commit) ("python-py" ,python-py) ("python-pytest" ,python-pytest) @@ -1216,14 +1212,6 @@ Expressions are constructed from parsed strings or directly in Python.") (modify-phases %standard-phases (replace 'check (lambda _ - ;; The 'runexamples' script sets PYTHONPATH to CWD, then goes - ;; on to import numpy. Somehow this works on their CI system. - ;; Let's just manage PYTHONPATH here instead. - (substitute* "runexamples.sh" - (("export PYTHONPATH=.*") "")) - (setenv "PYTHONPATH" - (string-append (getcwd) ":" - (getenv "PYTHONPATH"))) (invoke "./runexamples.sh") (invoke "nosetests" "-v")))))) (home-page "https://github.com/fhs/python-hdf4") @@ -1796,9 +1784,6 @@ language. It aims to be fast.") `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (format #t "current working dir ~s~%" (getcwd)) - (setenv "PYTHONPATH" - (string-append ".:" (getenv "PYTHONPATH"))) ;; We must run the test suite module directly, as it ;; fails to define the 'tempdir' variable in scope for ;; the tests otherwise @@ -2323,14 +2308,14 @@ in the current session, Python, and the OS.") (define-public python-six (package (name "python-six") - (version "1.14.0") + (version "1.15.0") (source (origin (method url-fetch) (uri (pypi-uri "six" version)) (sha256 (base32 - "02lw67hprv57hyg3cfy02y3ixjk3nzwc0dx3c4ynlvkfwkfdnsr3")))) + "0n82108wxn5giff50hd9ykjhd3zl7cndabdasi6568yvbh1rqqrh")))) (build-system python-build-system) (arguments `(#:phases @@ -2468,16 +2453,18 @@ audio playback capability for Python 3 on OSX, Windows, and Linux.") (define-public python-simplejson (package (name "python-simplejson") - (version "3.17.0") + (version "3.17.2") (source (origin (method url-fetch) (uri (pypi-uri "simplejson" version)) (sha256 (base32 - "108yf3252fy4ndqab7h46raksxfhcn113bzy2yd8369vidrjnjrb")))) + "0hc8nqwdlll4a9cr1k9msn5kmb6kmbjirpgvhjh254nr4sgwgv3m")))) (build-system python-build-system) - (home-page "http://simplejson.readthedocs.org/en/latest/") + (native-inputs + `(("python-toml" ,python-toml))) + (home-page "https://simplejson.readthedocs.io/en/latest") (synopsis "Json library for Python") (description @@ -3009,14 +2996,14 @@ server.") (define-public python-py (package (name "python-py") - (version "1.8.1") + (version "1.10.0") (source (origin (method url-fetch) (uri (pypi-uri "py" version)) (sha256 (base32 - "1ajjazg3913n0sp3vjyva9c2qh5anx8ziryng935f89604a0h9sy")))) + "1lqvkqk3b440g9z82gqbzlzas84wrm6ir8kplzhzavmn2pd1pf11")))) (build-system python-build-system) (arguments ;; FIXME: "ImportError: 'test' module incorrectly imported from @@ -3033,18 +3020,6 @@ server.") code introspection, and logging.") (license license:expat))) -(define-public python-py-next - (package - (inherit python-py) - (version "1.9.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "py" version)) - (sha256 - (base32 - "0hpk0gzd4v1pcnq7zinwg5n219czi23qghcswykqskkbwly8i9lw")))))) - (define-public python2-py (package-with-python2 python-py)) @@ -3239,11 +3214,9 @@ interfaces.") "cross-libc" "libc")))) (substitute* "src/click/_unicodefun.py" (("'locale'") - (string-append "'" glibc "/bin/locale'")))) - #t)) + (string-append "'" glibc "/bin/locale'")))))) (replace 'check (lambda _ - (setenv "PYTHONPATH" (string-append "./src:" (getenv "PYTHONPATH"))) (invoke "python" "-m" "pytest")))))) (native-inputs `(("python-pytest" ,python-pytest))) @@ -3359,8 +3332,6 @@ compare, diff, and patch JSON and JSON-like structures in Python.") (modify-phases %standard-phases (replace 'check (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - (setenv "PYTHONPATH" (string-append ".:" (getenv "PYTHONPATH"))) (invoke "trial" "jsonschema")))))) (native-inputs `(("python-setuptools_scm" ,python-setuptools-scm) @@ -3511,9 +3482,6 @@ somewhat intelligible.") '(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" - (string-append "./build/lib:" - (getenv "PYTHONPATH"))) (invoke "pytest" "-vv")))))) (native-inputs `(("python-pytest" ,python-pytest))) @@ -3609,13 +3577,13 @@ JavaScript-like message boxes. Types of dialog boxes include: (package (name "python-pympler") (home-page "https://pythonhosted.org/Pympler/") - (version "0.8") + (version "0.9") (source (origin (method url-fetch) (uri (pypi-uri "Pympler" version)) (sha256 (base32 - "08mrpnb6cv2nvfncvr8a9a8bpwhnasa924anapnjvnaw5jcd4k7p")))) + "0ivfw2k86nbw9ck9swidl4422w7bhjldxwj90a4sy5r1cbgygjzj")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases @@ -3676,7 +3644,8 @@ environments and back.") "0pm440pmpvgv5rbbnm8hk4qga5a292kvlm1bh3x2nwr8pb5p8xv0")))) (build-system python-build-system) (inputs - `(("libyaml" ,libyaml))) + `(("libyaml" ,libyaml) + ("python-cython" ,python-cython))) (home-page "https://pyyaml.org") (synopsis "YAML parser and emitter for Python") (description @@ -3716,36 +3685,61 @@ e.g. filters, callbacks and errbacks can all be promises.") (define-public python-virtualenv (package (name "python-virtualenv") - (version "20.2.1") + (version "20.3.1") (source (origin (method url-fetch) (uri (pypi-uri "virtualenv" version)) (sha256 (base32 - "1rd6wmymsgv0cdsn50jwybcvbbslzym3mzffcjbl42l8br9cgap0")))) + "1nbhnpzswcf3lmzn5xabmfdd7ki8r2w2i37y6wml54di6qi1l48c")))) (build-system python-build-system) (native-inputs `(("python-mock" ,python-mock) ("python-pytest" ,python-pytest) - ;; NOTE: guix lint remarks that "python-setuptools should probably not - ;; be an input at all". However, removing the input makes the build error: - ;; File "setup.py", line 4, in <module> - ;; raise RuntimeError("setuptools >= 41 required to build") - ("python-setuptools" ,python-setuptools) ("python-setuptools-scm" ,python-setuptools-scm))) (propagated-inputs `(("python-appdirs" ,python-appdirs) ("python-distlib" ,python-distlib/next) ("python-filelock" ,python-filelock) - ("python-six" ,python-six) - ("python-importlib-metadata" ,python-importlib-metadata))) + ("python-six" ,python-six))) (home-page "https://virtualenv.pypa.io/") (synopsis "Virtual Python environment builder") (description "Virtualenv is a tool to create isolated Python environments.") (license license:expat))) +(define-public python2-virtualenv + (let ((base (package-with-python2 (strip-python2-variant python-virtualenv)))) + (package + (inherit base) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (add-after 'set-paths 'adjust-PYTHONPATH + (lambda* (#:key inputs #:allow-other-keys) + (let* ((python (assoc-ref inputs "python")) + (python-sitedir (string-append python "/lib/python2.7" + "/site-packages"))) + ;; XXX: 'python2' always comes first on PYTHONPATH + ;; and shadows the 'setuptools' input. Move python2 + ;; last: this should be fixed in python-build-system + ;; in a future rebuild cycle. + (setenv "PYTHONPATH" + (string-append (string-join (delete python-sitedir + (string-split + (getenv "PYTHONPATH") + #\:)) + ":") + ":" python-sitedir)) + (format #t "environment variable `PYTHONPATH' changed to `~a'~%" + (getenv "PYTHONPATH")) + #t)))))) + (propagated-inputs + `(("python-contextlib2" ,python2-contextlib2) + ,@(package-propagated-inputs base)))))) + (define-public python-markupsafe (package (name "python-markupsafe") @@ -3759,21 +3753,10 @@ e.g. filters, callbacks and errbacks can all be promises.") "0sqipg4fk7xbixqd8kq6rlkxj664d157bdwbh93farcphf92x1r9")))) (build-system python-build-system) (arguments - `(#:modules ((ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26) - (guix build utils) - (guix build python-build-system)) - #:phases (modify-phases %standard-phases + `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (let ((cwd (getcwd)) - (libdir (find (cut string-prefix? "lib." <>) - (scandir "build")))) - (setenv "PYTHONPATH" - (string-append cwd "/build/" libdir ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-vv"))))))) + (invoke "pytest" "-vv")))))) (native-inputs `(("python-pytest" ,python-pytest))) (home-page "https://github.com/mitsuhiko/markupsafe") @@ -3803,13 +3786,8 @@ for Python.") (replace 'check (lambda* (#:key tests? #:allow-other-keys) (if tests? - (begin - (setenv "PYTHONPATH" - (string-append "./build/lib:" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-vv")) - (format #t "test suite not run~%")) - #t))))) + (invoke "pytest" "-vv") + (format #t "test suite not run~%"))))))) (native-inputs `(("python-pytest" ,python-pytest))) (propagated-inputs @@ -4108,15 +4086,14 @@ text styles of documentation.") (define-public python-pygments (package (name "python-pygments") - (version "2.7.3") + (version "2.8.1") (source (origin (method url-fetch) (uri (pypi-uri "Pygments" version)) (sha256 (base32 - "05mps9r966r3dpqw6zrs1nlwjdf5y4960hl9m7abwb3qyfnarwyc")))) - (replacement python-pygments/fixed) + "153zyxigm879sk2n71lfv03y2pgxb7dl0dlsbwkz9aydxnkf2mi6")))) (build-system python-build-system) (arguments ;; FIXME: Tests require sphinx, which depends on this. @@ -4128,18 +4105,6 @@ text styles of documentation.") (license license:bsd-2) (properties `((python2-variant . ,(delay python2-pygments)))))) -(define python-pygments/fixed - (package - (inherit python-pygments) - (version "2.7.4") - (source - (origin - (method url-fetch) - (uri (pypi-uri "Pygments" version)) - (sha256 - (base32 - "0dy35ry5qa8dpklk4fkj9kfpw2qb4mh5ha9866kw30wf96dx0jfz")))))) - ;; Pygments 2.6 and later does not support Python 2. (define-public python2-pygments (let ((base (package-with-python2 (strip-python2-variant python-pygments)))) @@ -4346,8 +4311,7 @@ ecosystem, but can naturally be used also by other projects.") ;; ;; OverflowError: mktime argument out of range (setenv "TZDIR" - (string-append (assoc-ref inputs "tzdata") - "/share/zoneinfo")) + (search-input-directory inputs "share/zoneinfo")) (setenv "TZ" "Europe/Paris") (invoke "python" "utest/run.py")))))) @@ -4820,7 +4784,14 @@ matching of file paths.") (substitute* "tests/test_black.py" (("( *)def test_python38" match indent) (string-append indent "@unittest.skip(\"guix\")\n" match))) - #t))))) + #t)) + ;; Remove blackd, because it depends on python-aiohttp and + ;; python-aiohttp-cors. + (add-after 'unpack 'remove-entrypoint + (lambda _ + (substitute* "setup.py" + (("\\s*\"blackd=blackd:patched_main \\[d\\]\",\n") "") + (("\"blackd\", ") ""))))))) (propagated-inputs `(("python-click" ,python-click) ("python-attrs" ,python-attrs) @@ -5310,11 +5281,11 @@ color scales, and color space conversion easy. It has support for: ("pkg-config" ,pkg-config) ("python-sphinx" ,python-sphinx) ("python-numpydoc" ,python-numpydoc) - ("texlive" ,(texlive-union (list texlive-fonts-cm-super + ("texlive" ,(texlive-updmap.cfg (list texlive-fonts-cm-super texlive-fonts-ec texlive-generic-ifxetex texlive-generic-pdftex - texlive-amsfonts/patched + texlive-amsfonts texlive-latex-capt-of texlive-latex-cmap texlive-latex-environ @@ -5376,7 +5347,7 @@ color scales, and color space conversion easy. It has support for: (sphinx-theme-checkout (assoc-ref inputs scipy-sphinx-theme)) (pyver ,(string-append "PYVER="))) - ;; FIXME: this is needed to for texlive-union to generate + ;; FIXME: this is needed to for texlive-updmap.cfg to generate ;; fonts, which are not found. (setenv "HOME" "/tmp") @@ -5847,7 +5818,7 @@ toolkits.") ("python-ipykernel" ,python-ipykernel) ("python-mock" ,python-mock) ("graphviz" ,graphviz) - ("texlive" ,(texlive-union (list texlive-amsfonts/patched + ("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts texlive-latex-amsmath texlive-latex-enumitem texlive-latex-expdlist @@ -5873,9 +5844,7 @@ toolkits.") (replace 'build (lambda _ (chdir "doc") - (setenv "PYTHONPATH" - (string-append (getenv "PYTHONPATH") - ":" (getcwd) "/../examples/units")) + (setenv "PYTHONPATH" "../examples/units") (substitute* "conf.py" ;; Don't use git. (("^SHA = check_output.*") @@ -5910,8 +5879,7 @@ toolkits.") "./matplotlib-figures") (invoke "makeinfo" "--no-split" "-o" "matplotlib.info" "matplotlib.texi")) - (install-file "build/texinfo/matplotlib.info" info)) - #t))))) + (install-file "build/texinfo/matplotlib.info" info))))))) (home-page (package-home-page python-matplotlib)) (synopsis "Documentation for the python-matplotlib package") (description (package-description python-matplotlib)) @@ -6145,24 +6113,12 @@ Python code against some of the style conventions in "07ikq2c72kd263hpldw55y0px2l3g34hjk66ml9lryh1jv287qmf")))) (build-system python-build-system) (arguments - '(#:modules ((ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26) - (guix build utils) - (guix build python-build-system)) - #:phases (modify-phases %standard-phases + '(#:phases (modify-phases %standard-phases (replace 'check (lambda* (#:key tests? #:allow-other-keys) (if tests? - (begin - (let ((libdir (find (cut string-prefix? "lib." <>) - (scandir "build")))) - (setenv "PYTHONPATH" - (string-append "./build/" libdir ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-vv"))) - (format #t "test suite not run~%")) - #t))))) + (invoke "pytest" "-vv") + (format #t "test suite not run~%"))))))) (native-inputs `(("python-pytest" ,python-pytest) ("python-pytest-cov" ,python-pytest-cov))) @@ -6241,14 +6197,14 @@ by pycodestyle.") (define-public python-distlib (package (name "python-distlib") - (version "0.3.0") + (version "0.3.1") (source (origin (method url-fetch) (uri (pypi-uri "distlib" version ".zip")) (sha256 (base32 - "08fyi2r246733vharl2yckw20rilci28r91mzrnnvcr638inw5if")))) + "1wdzv7fsjhrkhh1wfkarlhcwa8m00mgcpdsvknmf2qy8f9l13xpd")))) (build-system python-build-system) (arguments `(#:phases @@ -6971,22 +6927,16 @@ support for Python 3 and PyPy. It is based on cffi.") (("filenames = \\(library_filename,\\) \\+ filenames") "pass") (("libcairo.so.2") - (string-append (assoc-ref inputs "cairo") - "/lib/libcairo.so.2"))) + (search-input-file inputs "/lib/libcairo.so.2"))) (substitute* "cairocffi/pixbuf.py" (("libgdk_pixbuf-2.0.so.0") - (string-append (assoc-ref inputs "gdk-pixbuf") - "/lib/libgdk_pixbuf-2.0.so.0")) + (search-input-file inputs "/lib/libgdk_pixbuf-2.0.so.0")) (("libgobject-2.0.so.0") - (string-append (assoc-ref inputs "glib") - "/lib/libgobject-2.0.so.0")) + (search-input-file inputs "/lib/libgobject-2.0.so.0")) (("libglib-2.0.so.0") - (string-append (assoc-ref inputs "glib") - "/lib/libglib-2.0.so.0")) + (search-input-file inputs "/lib/libglib-2.0.so.0")) (("libgdk-3.so.0") - (string-append (assoc-ref inputs "gtk+") - "/lib/libgdk-3.so.0"))) - #t)) + (search-input-file inputs "/lib/libgdk-3.so.0"))))) (add-after 'unpack 'disable-linters ;; Their check fails; none of our business. (lambda _ @@ -7025,13 +6975,13 @@ PNG, PostScript, PDF, and SVG file output.") (define-public python-decorator (package (name "python-decorator") - (version "4.3.0") + (version "4.4.2") (source (origin (method url-fetch) (uri (pypi-uri "decorator" version)) (sha256 - (base32 "0308djallnh00v112y5b7nadl657ysmkp6vc8xn51d6yzc9zm7n3")))) + (base32 "1rxzhk5zwiggk45hl53zydvy70lk654kg0nc1p54090p402jz9p3")))) (build-system python-build-system) (home-page "https://pypi.org/project/decorator/") (synopsis "Python module to simplify usage of decorators") @@ -7283,13 +7233,13 @@ child application and control it as if a human were typing commands.") (define-public python-setuptools-scm (package (name "python-setuptools-scm") - (version "3.4.3") + (version "5.0.1") (source (origin (method url-fetch) (uri (pypi-uri "setuptools_scm" version)) (sha256 (base32 - "083k93wi7mrmp1cn28hcbnr6sivbgls0y7zz2m5qzn1wg04a3f16")))) + "0ahlrxxkx2xhmxskx57gc96w3bdndflxx30304ihvm7ds136nny8")))) (build-system python-build-system) (home-page "https://github.com/pypa/setuptools_scm/") (synopsis "Manage Python package versions in SCM metadata") @@ -8163,10 +8113,10 @@ computing.") `(("python-sphinx" ,python-sphinx) ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme) ;; FIXME: It's possible that a smaller union would work just as well. - ("texlive" ,(texlive-union (list texlive-amsfonts/patched + ("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts texlive-fonts-ec texlive-generic-ifxetex - texlive-generic-pdftex + texlive-pdftex texlive-latex-capt-of texlive-latex-cmap texlive-latex-environ @@ -9101,8 +9051,6 @@ Python 2 and Python 3.") (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" (string-append "./build/lib:" - (getenv "PYTHONPATH"))) (invoke "py.test" "-v")))))) (native-inputs `(("python2-pytest" ,python2-pytest))) @@ -9257,11 +9205,10 @@ PEP 8.") (method url-fetch) (uri (pypi-uri "pyflakes" version)) (sha256 - (base32 - "1ny10364ciqh4ripasj4zzv4145l21l3s85m3qlrvfq5pk58xg7m")))) + (base32 + "1ny10364ciqh4ripasj4zzv4145l21l3s85m3qlrvfq5pk58xg7m")))) (build-system python-build-system) - (home-page - "https://github.com/pyflakes/pyflakes") + (home-page "https://github.com/PyCQA/pyflakes") (synopsis "Passive checker of Python programs") (description "Pyflakes statically checks Python source code for common errors.") @@ -9286,21 +9233,21 @@ PEP 8.") (name "python-mccabe") (version "0.6.1") (source - (origin - (method url-fetch) - (uri (pypi-uri "mccabe" version)) - (sha256 - (base32 - "07w3p1qm44hgxf3vvwz84kswpsx6s7kvaibzrsx5dzm0hli1i3fx")))) + (origin + (method url-fetch) + (uri (pypi-uri "mccabe" version)) + (sha256 + (base32 + "07w3p1qm44hgxf3vvwz84kswpsx6s7kvaibzrsx5dzm0hli1i3fx")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest-bootstrap) - ("python-pytest-runner" ,python-pytest-runner))) - (home-page "https://github.com/flintwork/mccabe") + `(("python-toml", python-toml) + ("python-pytest" ,python-pytest-bootstrap) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/PyCQA/mccabe") (synopsis "McCabe checker, plugin for flake8") - (description - "This package provides a Flake8 plug-in to compute the McCabe cyclomatic -complexity of Python source code.") + (description "This package provides a Flake8 plug-in to compute the McCabe +cyclomatic complexity of Python source code.") (license license:expat))) (define-public python2-mccabe @@ -9477,14 +9424,11 @@ unnecessary plus operators for explicit string literal concatenation.") (substitute* "setup.cfg" (("\\[pytest\\]") "[tool:pytest]")) - - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) (invoke "py.test" "-v")))))) + (propagated-inputs + `(("python-flake8" ,python-flake8))) (native-inputs - `(("python-flake8" ,python-flake8) - ("python-mock" ,python-mock) + `(("python-mock" ,python-mock) ("python-pep8" ,python-pep8) ("python-pycodestyle" ,python-pycodestyle) ("python-pytest" ,python-pytest))) @@ -9523,14 +9467,14 @@ files.") (define-public python-flake8-pyi (package (name "python-flake8-pyi") - (version "20.5.0") + (version "20.10.0") (source (origin (method url-fetch) (uri (pypi-uri "flake8-pyi" version)) (sha256 (base32 - "1zpq4s9kp8w95pccmhhyyx1ff2zhnidcf1zb3xs46lzcx9plvnzk")))) + "0b27n2pmrxcc7nva4wp2i7mrag0fnq0firvhg1ljq593a45b5qyf")))) (build-system python-build-system) (propagated-inputs `(("python-attrs" ,python-attrs) @@ -9977,14 +9921,7 @@ third-party code.") (modify-phases %standard-phases (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-v" "test"))))))) + (invoke "pytest" "-v" "test")))))) (native-inputs `(("python-pytest" ,python-pytest))) (synopsis "MessagePack (de)serializer") @@ -10647,6 +10584,7 @@ is binding LibSass.") (build-system python-build-system) (arguments `(#:tests? #f)) ;circular dependency with python-aiohttp + (propagated-inputs `(("python-idna" ,python-idna))) (home-page "https://github.com/aio-libs/idna-ssl") (synopsis "Patch @code{ssl.match_hostname} for Unicode(idna) domains support") (description "Patch @code{ssl.match_hostname} for Unicode(idna) @@ -10963,7 +10901,7 @@ JSON Reference and JSON Pointer.") ("python-json-spec" ,python-json-spec) ("python-jsonschema" ,python-jsonschema) ("python-pylint" ,python-pylint) - ("python-pytest" ,python-pytest-6) + ("python-pytest" ,python-pytest) ("python-pytest-benchmark" ,python-pytest-benchmark) ("python-pytest-cache" ,python-pytest-cache) @@ -11229,8 +11167,8 @@ time.") ("python-pytest" ,python-pytest) ("python-pytest-cov" ,python-pytest-cov) ("python-pytest-dependency" ,python-pytest-dependency) - ("texlive" ,(texlive-union (list texlive-adjustbox - texlive-amsfonts/patched + ("texlive" ,(texlive-updmap.cfg (list texlive-adjustbox + texlive-amsfonts texlive-booktabs texlive-caption texlive-eurosym @@ -11821,14 +11759,15 @@ tables.") (define-public python-atomicwrites (package (name "python-atomicwrites") - (version "1.3.0") + (version "1.4.0") (source (origin (method url-fetch) (uri (pypi-uri "atomicwrites" version)) (sha256 (base32 - "19ngcscdf3jsqmpcxn6zl5b6anmsajb6izp1smcd1n02midl9abm")))) + "0yla2svfhfqrcj8qbyqzx7wi4jy0dwcxvlkg0k3zjd54s5m3jw5f")))) (build-system python-build-system) + (arguments `(#:tests? #f)) ;avoid circular dependency with pytest (synopsis "Atomic file writes in Python") (description "Library for atomic file writes using platform dependent tools for atomic file system operations.") @@ -12402,8 +12341,6 @@ text.") #t)) (replace 'check (lambda _ - (setenv "PYTHONPATH" (string-append "./build/lib:" - (getenv "PYTHONPATH"))) (invoke "pytest" "-vv" "-m" "not network" ;; These tests require Docker. "-k" "not test_terminate_job \ @@ -13787,31 +13724,19 @@ syntax highlighting, markdown and more to the terminal.") (define-public python-magic (package (name "python-magic") - (version "0.4.15") + (version "0.4.22") + (home-page "https://github.com/ahupp/python-magic") (source (origin - (method url-fetch) - (uri (pypi-uri "python-magic" version)) + (method git-fetch) + (uri (git-reference (url home-page) (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "1mgwig9pnzgkf86q9ji9pnc99bngms15lfszq5rgqb9db07mqxpk")) - (file-name (string-append name "-" version "-checkout")))) + "0zbdjr5shijs0jayz7gycpx0kn6v2bh83dpanyajk2vmy47jvbd6")))) (build-system python-build-system) (arguments - ;; The tests are unreliable, so don't run them. The tests fail - ;; under Python3 because they were written for Python2 and - ;; contain import statements that do not work in Python3. One of - ;; the tests fails under Python2 because its assertions are - ;; overly stringent; it relies on comparing output strings which - ;; are brittle and can change depending on the version of - ;; libmagic being used and the system on which the test is - ;; running. In my case, under GuixSD 0.10.0, only one test - ;; failed, and it seems to have failed only because the version - ;; of libmagic that is packaged in Guix outputs a slightly - ;; different (but not wrong) string than the one that the test - ;; expected. - '(#:tests? #f - #:phases (modify-phases %standard-phases + '(#:phases (modify-phases %standard-phases ;; Replace a specific method call with a hard-coded ;; path to the necessary libmagic.so file in the ;; store. If we don't do this, then the method call @@ -13821,24 +13746,22 @@ syntax highlighting, markdown and more to the terminal.") (add-before 'build 'hard-code-path-to-libmagic (lambda* (#:key inputs #:allow-other-keys) (let ((file (assoc-ref inputs "file"))) - (substitute* "magic.py" - (("ctypes.util.find_library\\('magic'\\)") - (string-append "'" file "/lib/libmagic.so'"))) - #t))) - (add-before 'install 'disable-egg-compression - (lambda _ - (let ((port (open-file "setup.cfg" "a"))) - (display "\n[easy_install]\nzip_ok = 0\n" - port) - (close-port port) - #t)))))) + (substitute* "magic/loader.py" + (("ctypes\\.util\\.find_library\\('magic'\\)") + (string-append "'" file "/lib/libmagic.so'")))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + ;; The test suite mandates this variable. + (setenv "LC_ALL" "en_US.UTF-8") + (if tests? + (invoke "python" "./test/test.py") + (format #t "test suite not run~%"))))))) + (native-inputs + `(("which" ,which))) (inputs ;; python-magic needs to be able to find libmagic.so. `(("file" ,file))) - (home-page - "https://github.com/ahupp/python-magic") - (synopsis - "File type identification using libmagic") + (synopsis "File type identification using libmagic") (description "This module uses ctypes to access the libmagic file type identification library. It makes use of the local magic database and @@ -14170,12 +14093,6 @@ module in Python 3.5 and later.") (modify-phases %standard-phases (replace 'check (lambda _ - ;; Upstream runs tests after installation and the package itself - ;; resides in a subdirectory. Extend PYTHONPATH so it will be - ;; found. - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) (invoke "py.test" "-vv" "tests" "README.rst")))))) (native-inputs `(("python-pytest" ,python-pytest) @@ -14338,13 +14255,6 @@ graphviz.") (string-join disabled-tests "\n"))))))) (replace 'check (lambda _ - ;; Make sure the build directory is on PYTHONPATH. - (setenv "PYTHONPATH" - (string-append - (getenv "PYTHONPATH") ":" - (getcwd) "/build/" - (car (scandir "build" (cut string-prefix? "lib." <>))))) - ;; Use the build daemons configured number of workers. (setenv "NWORKERS" (number->string (parallel-job-count))) @@ -14402,7 +14312,14 @@ format.") "17d3hnxv9qndagzz63mdpyk99xj63p9gq586vjn0rxk8cl197nym")))) (build-system python-build-system) (arguments - '(#:tests? #f)) ; FIXME: some tests fail + '(#:tests? #f ; FIXME: some tests fail + #:phases + (modify-phases %standard-phases + ;; Remove scripts, because they depend on [conch] + (add-after 'unpack 'remove-entrypoint + (lambda _ + (substitute* "src/twisted/python/_setup.py" + (("\".+ = twisted\\.conch\\.scripts\\..+\",") ""))))))) (propagated-inputs `(("python-zope-interface" ,python-zope-interface) ("python-pyhamcrest" ,python-pyhamcrest) @@ -14965,17 +14882,15 @@ some degree most natural languages too.") (delete-file "libcst/tests/test_pyre_integration.py") (delete-file "libcst/codemod/tests/test_codemod_cli.py") (delete-file "libcst/metadata/tests/test_full_repo_manager.py") - (delete-file "libcst/metadata/tests/test_type_inference_provider.py") - #t)) + (delete-file "libcst/metadata/tests/test_type_inference_provider.py"))) (add-before 'check 'generate-test-data (lambda _ - (setenv "PYTHONPATH" (string-append (getcwd) ":" (getenv "PYTHONPATH"))) (invoke "python" "-m" "libcst.codegen.generate" "visitors") (invoke "python" "-m" "libcst.codegen.generate" "return_types"))) (replace 'check - (lambda _ - (invoke "python" "-m" "unittest") - #t))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "unittest"))))))) (native-inputs `(("python-black" ,python-black) ("python-isort" ,python-isort))) @@ -15000,6 +14915,14 @@ feels like an AST.") ;; libcst/_add_slots.py license:asl2.0)))) +(define-public python-libcst-minimal + (hidden-package + (package + (inherit python-libcst) + (name "python-libcst-minimal") + (arguments '(#:tests? #f)) + (native-inputs '())))) + (define-public python-typing-inspect (package (name "python-typing-inspect") @@ -15009,7 +14932,8 @@ feels like an AST.") (uri (pypi-uri "typing_inspect" version)) (sha256 (base32 - "1dzs9a1pr23dhbvmnvms2jv7l7jk26023g5ysf0zvnq8b791s6wg")))) + "1dzs9a1pr23dhbvmnvms2jv7l7jk26023g5ysf0zvnq8b791s6wg")) + (patches (search-patches "python-typing-inspect-fix.patch")))) (build-system python-build-system) (propagated-inputs `(("python-mypy-extensions" ,python-mypy-extensions) @@ -15258,7 +15182,8 @@ YAML-serialized data.") (build-system python-build-system) (native-inputs `(("python-pytest" ,python-pytest) - ("python-nose" ,python-nose))) + ("python-nose" ,python-nose) + ("python-toml" ,python-toml))) (propagated-inputs `(("python-simplejson" ,python-simplejson))) (home-page "https://github.com/sdispater/backpack") @@ -15570,9 +15495,7 @@ and/or Xon/Xoff. The port is accessed in RAW mode.") (add-after 'patch-generated-file-shebangs 'set-sdl-paths (lambda* (#:key inputs #:allow-other-keys) (setenv "KIVY_SDL2_PATH" - (string-append (assoc-ref inputs "sdl-union") - "/include/SDL2")) - #t))))) + (search-input-directory inputs "/include/SDL2"))))))) (native-inputs `(("pkg-config" ,pkg-config) ("python-cython" ,python-cython))) @@ -15648,14 +15571,9 @@ binary or text.") (arguments `(#:phases (modify-phases %standard-phases - (add-before 'check 'set-pythonpath + (add-before 'check 'set-home (lambda _ - (setenv "PYTHONPATH" - (string-append - (getcwd) "/src/" - ":" (getenv "PYTHONPATH"))) - (setenv "HOME" "") - #t))))) + (setenv "HOME" "")))))) (native-inputs `(("python-coverage" ,python-coverage) ("python-nose" ,python-nose))) @@ -15803,8 +15721,6 @@ discovery, monitoring and configuration.") (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" (string-append "./build/lib:" - (getenv "PYTHONPATH"))) (invoke "pytest" "-vv")))))) (build-system python-build-system) (native-inputs @@ -15835,27 +15751,14 @@ Python to manipulate OpenDocument 1.2 files.") "1ksqfai72dbcfbwx43pxl658j59mx2rvqypjy1fk0ax2qd6lccx6")))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (srfi srfi-1) - (srfi srfi-26) - (ice-9 ftw)) - #:phases + `(#:phases (modify-phases %standard-phases (add-before 'check 'set-cachedir ;; Tests require write access to $HOME by default (lambda _ (setenv "PYTHON_EGG_CACHE" "/tmp") #t)) (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append - cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-v"))))))) + (invoke "pytest" "-v")))))) (native-inputs `(("python-hypothesis" ,python-hypothesis) ("python-pytest-cov" ,python-pytest-cov) @@ -16187,10 +16090,6 @@ is used by PostgreSQL and the OpenSSH Server for example.") (delete-file "tests/__init__.py"))) (replace 'check (lambda _ - ;; Extend PYTHONPATH so the built package will be found. - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) (invoke "py.test" "-vv" )))))) (native-inputs `(("python-pytest" ,python-pytest))) @@ -16219,16 +16118,6 @@ useful as a validator for JSON data.") (base32 "090vdksbz341f7ljvr0zswblw4lspa8qaiikzyjkf318arpxmil9")))) (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'check 'set-pythonpath - (lambda _ - (setenv "PYTHONPATH" - (string-append - (getcwd) "/test/" - ":" (getenv "PYTHONPATH"))) - #t))))) (home-page "https://github.com/eliben/pyelftools") (synopsis @@ -16257,8 +16146,7 @@ Record Format (DWARF).") (modify-phases %standard-phases (add-after 'unpack 'patch (lambda* (#:key inputs #:allow-other-keys) - (let ((libev (string-append (assoc-ref inputs "libev") - "/lib/libev.so.4"))) + (let ((libev (search-input-file inputs "/lib/libev.so.4"))) (substitute* "setup.py" (("libev_dll_name = find_library\\(\\\"ev\\\"\\)") (string-append "libev_dll_name = \"" libev "\""))))))))) @@ -16492,43 +16380,25 @@ possible on all supported Python versions.") "0ar5dqjnqaw0c17mymd6xgd81jn9br9fblawr0x438v1571bkaya")))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26)) - #:phases (modify-phases %standard-phases + `(#:phases (modify-phases %standard-phases (add-after 'unpack 'use-absolute-python (lambda _ (substitute* "Cheetah/CheetahWrapper.py" (("#!/usr/bin/env python") - (string-append "#!" (which "python")))) - #t)) + (string-append "#!" (which "python")))))) (add-after 'unpack 'fix-tests (lambda _ (substitute* "Cheetah/Tests/ImportHooks.py" (("os.path.dirname\\(__file__\\)") - (string-append "'" (getcwd) "/Cheetah/Tests'"))) - #t)) + (string-append "'" (getcwd) "/Cheetah/Tests'"))))) (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append - cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" (getenv "PYTHONPATH"))) - (setenv "PATH" - (string-append (getenv "PATH") - ":" cwd "/bin")) - (setenv "TMPDIR" "/tmp") - - (substitute* "Cheetah/Tests/Test.py" - (("unittest.TextTestRunner\\(\\)") - "unittest.TextTestRunner(verbosity=2)")) - - (invoke "python" "Cheetah/Tests/Test.py"))))))) + (setenv "TMPDIR" "/tmp") + (substitute* "Cheetah/Tests/Test.py" + (("unittest.TextTestRunner\\(\\)") + "unittest.TextTestRunner(verbosity=2)")) + + (invoke "python" "Cheetah/Tests/Test.py")))))) (propagated-inputs `(("python-markdown" ,python-markdown))) ;optional (home-page "https://cheetahtemplate.org/") @@ -16624,9 +16494,6 @@ protocols written in pure Python.") (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) (invoke "python" "test/test_pbkdf2.py")))))) (propagated-inputs `(("python-pycrypto" ,python-pycrypto))) ; optional @@ -16962,7 +16829,15 @@ instead of servers and network commands.") ;; python-twisted depends on python-automat. Twisted is optional, but the ;; tests fail if it is not available. Also see ;; <https://github.com/glyph/automat/issues/71>. - (arguments '(#:tests? #f)) + (arguments + `(#:tests? #f + #:phases + (modify-phases %standard-phases + ;; Remove script, because it depends on python-twisted. + (add-after 'unpack 'remove-entrypoint + (lambda _ + (substitute* "setup.py" + (("\"automat-visualize = automat._visualize:tool\"") ""))))))) (native-inputs `(("python-m2r" ,python-m2r) ("python-setuptools-scm" ,python-setuptools-scm) @@ -17039,33 +16914,17 @@ and bit flag values.") "1yzmwi5d197p0qhl7rl4xi9q1w8mk9i3zn6hrl22knbcrb1slspg")))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26)) - #:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append - cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH"))) - (invoke "python" "-m" "pytest")))))))) + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest"))))))) (native-inputs `(("python-coverage" ,python-coverage) ("python-hypothesis" ,python-hypothesis) ("python-pympler" ,python-pympler) ("python-pytest" ,python-pytest) - ("python-six" ,python-six) - ("python-sphinx" ,python-sphinx) - ("python-zope-interface" ,python-zope-interface))) + ("python-six" ,python-six))) (home-page "https://github.com/python-attrs/attrs/") (synopsis "Attributes without boilerplate") (description "@code{attrs} is a Python package with class decorators that @@ -17080,13 +16939,6 @@ protocols.") (package (inherit python-attrs) (name "python-attrs-bootstrap") - (version "19.3.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "attrs" version)) - (sha256 - (base32 - "0wky4h28n7xnr6xv69p9z6kv8bzn50d10c3drmd9ds8gawbcxdzp")))) (native-inputs `()) (arguments `(#:tests? #f)))) @@ -17192,35 +17044,34 @@ happens using the @code{logging} library.") (license license:gpl3+))) (define-public python-astroid - (package - (name "python-astroid") - (version "2.4.2") - (source - (origin - (method url-fetch) - (uri (pypi-uri "astroid" version)) - (sha256 - (base32 "00xp5gqxidxvgg1bwd91myqzdf2fpb9cjwbdl3p7gwqvlk17hh1g")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Check to see if the version pinning has been removed. - (substitute* "astroid/__pkginfo__.py" - (("==1\\.4\\.\\*") ">=1.4.0")) - #t)))) - (build-system python-build-system) - (propagated-inputs - `(("python-lazy-object-proxy" ,python-lazy-object-proxy) - ("python-six" ,python-six) - ("python-wrapt" ,python-wrapt))) - (native-inputs - `(("python-dateutil" ,python-dateutil) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner))) - (home-page "https://github.com/PyCQA/astroid") - (synopsis "Common base representation of python source code for pylint and + (let ((revision "1") + (commit "5f67396894c79c4661e357ec8bb03aa134a51109")) + (package + (name "python-astroid") + (version (git-version "2.4.2" revision commit)) + (source + (origin + ;; The current 2.4.2 release doesn't support Python 3.9. + (method git-fetch) + (uri (git-reference + (url "https://github.com/PyCQA/astroid") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1ir5716wqgz39jva7x9chhjy41yi3n7fkymb8snh5giwig8kyipk")))) + (build-system python-build-system) + (propagated-inputs + `(("python-lazy-object-proxy" ,python-lazy-object-proxy) + ("python-six" ,python-six) + ("python-wrapt" ,python-wrapt))) + (native-inputs + `(("python-dateutil" ,python-dateutil) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/PyCQA/astroid") + (synopsis "Common base representation of python source code for pylint and other projects") - (description "@code{python-astroid} provides a common base representation + (description "@code{python-astroid} provides a common base representation of python source code for projects such as pychecker, pyreverse, pylint, etc. It provides a compatible representation which comes from the _ast module. It @@ -17229,8 +17080,8 @@ down the AST and building an extended ast. The new node classes have additional methods and attributes for different usages. They include some support for static inference and local name scopes. Furthermore, astroid builds partial trees by inspecting living objects.") - (license license:lgpl2.1+) - (properties `((python2-variant . ,(delay python2-astroid)))))) + (license license:lgpl2.1+) + (properties `((python2-variant . ,(delay python2-astroid))))))) (define-public python2-astroid (let ((base (package-with-python2 @@ -17291,23 +17142,77 @@ version, is suitable to be include as a dependency in other projects.") (define-public python-isort (package (name "python-isort") - (version "4.3.4") + (version "5.7.0") (source (origin (method git-fetch) (uri (git-reference - ;; Tests pass only from the Github sources - (url "https://github.com/timothycrosley/isort") - (commit version))) + ;; Tests pass only from the Github sources + (url "https://github.com/timothycrosley/isort") + (commit version))) (file-name (git-file-name name version)) + (modules '((guix build utils))) + (snippet '(for-each delete-file (find-files "." "\\.whl$"))) (sha256 (base32 - "1q0mlrpki5vjbgwxag5rghljjcfg7mvb0pbkwid80p0sqrxlm2p6")))) + "0phq4s911mjjdyr5h5siz93jnpkqb2qgphgcfk6axncgxr8i7vi1")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; A foretaste of what our future python-build-system will need to + ;; do. + (replace 'build + (lambda _ + (invoke "python" "-m" "build" "--wheel" "--no-isolation" "."))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (whl (car (find-files "dist" "\\.whl$")))) + (invoke "pip" "--no-cache-dir" "--no-input" + "install" "--no-deps" "--prefix" out whl)))) + (add-after 'install 'install-example-plugins + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + ;; Patch to use the core poetry API. + (substitute* '("example_isort_formatting_plugin/pyproject.toml" + "example_shared_isort_profile/pyproject.toml") + (("poetry>=0.12") + "poetry-core>=1.0.0") + (("poetry.masonry.api") + "poetry.core.masonry.api")) + ;; Build the example plugins. + (for-each (lambda (source-directory) + (invoke "python" "-m" "build" "--wheel" + "--no-isolation" "--outdir=dist" + source-directory)) + '("example_isort_formatting_plugin" + "example_shared_isort_profile")) + ;; Install them to temporary storage, for the test. + (setenv "HOME" (getcwd)) + (let ((example-whls (find-files "dist" "^example.*\\.whl$"))) + (apply invoke "pip" "--no-cache-dir" "--no-input" + "install" "--user" "--no-deps" example-whls))))) + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (setenv "PATH" (string-append (getenv "PATH") ":" bin))) + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv" "tests/unit/" + "--ignore=tests/unit/test_deprecated_finders.py"))))))) (native-inputs - `(("python-mock" ,python-mock) + `(("git" ,git-minimal) + ("python-black" ,python-black) + ("python-colorama" ,python-colorama) + ("python-hypothesmith" ,python-hypothesmith) + ("python-libcst" ,python-libcst-minimal) + ("python-poetry-core" ,python-poetry-core) + ("python-pylama" ,python-pylama) + ("python-pypa-build" ,python-pypa-build) + ("python-pytest-mock" ,python-pytest-mock) ("python-pytest" ,python-pytest))) - (home-page "https://github.com/timothycrosley/isort") + (home-page "https://github.com/PyCQA/isort") (synopsis "Python utility/library to sort python imports") (description "@code{python-isort} is a python utility/library to sort imports alphabetically, and automatically separated into sections. It @@ -17712,9 +17617,6 @@ of corner cases, factory_boy allows you to use objects customized for the current test, while only declaring the test-specific fields") (license license:expat))) -(define-public python2-factory-boy - (package-with-python2 python-factory-boy)) - (define-public python-translate-toolkit (package (name "python-translate-toolkit") @@ -17804,10 +17706,17 @@ information.") (package/inherit python-packaging (name "python-packaging-bootstrap") + (arguments + (substitute-keyword-arguments (package-arguments python-packaging) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'fix-dependencies + (lambda* (#:key tests? #:allow-other-keys) + (substitute* "setup.py" (("\"six\"") "")))))) + ((#:tests? _ #f) #f))) (native-inputs '()) (propagated-inputs - `(("python-pyparsing" ,python-pyparsing))) - (arguments '(#:tests? #f))))) + `(("python-pyparsing" ,python-pyparsing)))))) (define-public python2-packaging-bootstrap (hidden-package @@ -17816,7 +17725,8 @@ information.") (name "python2-packaging-bootstrap") (native-inputs '()) (propagated-inputs - `(("python-pyparsing" ,python2-pyparsing))) + `(("python-pyparsing" ,python2-pyparsing) + ("python-six" ,python2-six-bootstrap))) (arguments `(#:tests? #f ,@(package-arguments python2-packaging)))))) @@ -17862,6 +17772,13 @@ for more filetypes can be easily added by creating plugins for them.") (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + ((".*'future'.*") + "") + (("colorama==0.4.1") + "colorama>=0.4.1")))) (replace 'check (lambda _ (invoke "python" "radon/tests/run.py")))))) @@ -18095,23 +18012,11 @@ applying JSON Patches according to RFC 6902.") "17dvx15m3r49bmif5zlli8kzjd6bys6psixzbp14sd5367d9h8qi")))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26)) - #:phases + `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-v"))))))) + (invoke "pytest" "-v")))))) (native-inputs `(("python-pytest" ,python-pytest))) (home-page "https://rfc3986.readthedocs.io/") @@ -18433,19 +18338,13 @@ complex datatypes to and from native Python datatypes.") (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases - (add-after 'unpack 'disable-prance-tests - (lambda _ - ;; Disable validation tests since they require the - ;; optional 'prance' library which is not yet in Guix. - (substitute* "tests/test_ext_marshmallow_openapi.py" - (("def test_openapi_tools_validate.*" all) - (string-append "@pytest.mark.xfail\n" all))))) (replace 'check (lambda _ - (setenv "PYTHONPATH" - (string-append "./build/lib:" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-vv")))))) + (invoke "pytest" "-vv" + ;; Disable validation tests since they require + ;; the optional 'prance' library which is not + ;; yet in Guix. + "-k" "not openapi_tools_validate")))))) (propagated-inputs `(("python-pyyaml" ,python-pyyaml))) (native-inputs @@ -18480,9 +18379,6 @@ as Swagger.") (substitute* "Makefile" (("flake8 flasgger --ignore=F403") "flake8 flasgger --ignore=E731,F403")) - (setenv "PYTHONPATH" (string-append (getcwd) - ":" - (getenv "PYTHONPATH"))) (invoke "py.test")))))) (propagated-inputs `(("python-flask" ,python-flask) @@ -18869,25 +18765,26 @@ ignoring formatting changes.") (define-public python-tqdm (package (name "python-tqdm") - (version "4.43.0") + (version "4.60.0") (source (origin (method url-fetch) (uri (pypi-uri "tqdm" version)) (sha256 (base32 - "093v4c2x5hpigv47zvyxl8wh10y2yd2gvz3l9vchn0zsp8hv2pzk")))) + "1bjpy4mjg6ryp0ijvqi77vgs76l5hh3zrv3x4vmcwxrlbswvvppb")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - ;; This invokation is taken from tox.ini. - (invoke "nosetests" "--ignore-files=\"test_perf.py\"" - "-d" "-v" "tqdm/")))))) + (lambda _ + (invoke "pytest" "-vv" "-k" "not perf")))))) (native-inputs - `(("python-nose" ,python-nose))) + `(("python-pytest" ,python-pytest) + ("python-pytest-asyncio" ,python-pytest-asyncio) + ("python-pytest-timeout" ,python-pytest-timeout) + ("python-setuptools-scm" ,python-setuptools-scm) + ("python-toml" ,python-toml))) (home-page "https://github.com/tqdm/tqdm") (synopsis "Fast, extensible progress meter") (description @@ -19011,7 +18908,8 @@ lines are read from a single file.") (native-inputs `(("python-pbr" ,python-pbr-minimal))) (propagated-inputs - `(("python-linecache2" ,python-linecache2))) + `(("python-linecache2" ,python-linecache2) + ("python-six" ,python-six))) (home-page "https://github.com/testing-cabal/traceback2") (synopsis "Backports of the traceback module") @@ -19951,7 +19849,7 @@ source bytes using the UTF-8 encoding and then rewrites Python 3.6 style (define-public python-typed-ast (package (name "python-typed-ast") - (version "1.4.0") + (version "1.4.2") (source (origin (method git-fetch) @@ -19959,28 +19857,15 @@ source bytes using the UTF-8 encoding and then rewrites Python 3.6 style (url "https://github.com/python/typed_ast") (commit version))) (sha256 - (base32 "0l0hz809f7i356kmqkvfsaswiidb98j9hs9rrjnfawzqcbffzgyb")) + (base32 "1wr6pkvvrq6rzjjw88pd5xy8fy06msam4hlxbkglvdmwh4c083l0")) (file-name (git-file-name name version)))) (build-system python-build-system) (arguments - `(#:modules ((guix build utils) - (guix build python-build-system) - (ice-9 ftw) - (srfi srfi-1) - (srfi srfi-26)) - #:phases + `(#:phases (modify-phases %standard-phases (replace 'check (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH")))) - (invoke "pytest") - #t))))) + (invoke "pytest")))))) (native-inputs `(("python-pytest" ,python-pytest))) (home-page "https://github.com/python/typed_ast") (synopsis "Fork of Python @code{ast} modules with type comment support") @@ -20686,8 +20571,7 @@ user-space file systems in Python.") (("pytest < 5") "pytest < 7")) ;; We don't care about a coverage report. (substitute* "test/requirements.txt" - (("coverage.*") "coverage\n")) - #t)) + (("coverage.*") "coverage\n")))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? @@ -20695,11 +20579,7 @@ user-space file systems in Python.") (delete-file "test/test_js_client.py") (delete-file "test/test_tsd_types.py") (delete-file "test/test_python_gen.py") - (setenv "PYTHONPATH" - (string-append (getcwd) ":" - (getenv "PYTHONPATH"))) - (invoke "pytest")) - #t))))) + (invoke "pytest"))))))) (propagated-inputs `(("python-ply" ,python-ply) ("python-six" ,python-six))) @@ -21511,13 +21391,6 @@ data.") (arguments '(#:phases (modify-phases %standard-phases - (add-before 'check 'do-not-override-PYTHONPATH - (lambda _ - ;; Append to PYTHONPATH instead of overriding it so - ;; that dependencies from Guix can be found. - (substitute* "tests/testutils.py" - (("env\\['PYTHONPATH'\\] = pythonpath") - "env['PYTHONPATH'] += os.pathsep + pythonpath")))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (if tests? @@ -22997,8 +22870,6 @@ essential tools are located.") (modify-phases %standard-phases (replace 'check (lambda _ - (setenv "PYTHONPATH" - (string-append (getcwd) ":" (getenv "PYTHONPATH"))) (invoke "python" "./tests/__main__.py")))))) (propagated-inputs `(("python-dill" ,python-dill) @@ -24538,8 +24409,7 @@ be necessary when using @code{cmd}.") (modify-phases %standard-phases (add-before 'build 'qualify-libtidy (lambda* (#:key inputs #:allow-other-keys) - (let ((libtidy (string-append (assoc-ref inputs "tidy") - "/lib/libtidy.so"))) + (let ((libtidy (search-input-file inputs "/lib/libtidy.so"))) (substitute* "tidylib/tidy.py" (("ctypes\\.util\\.find_library\\('tidy'\\)") (format #f "'~a'" libtidy))) @@ -24925,9 +24795,8 @@ It adds a simple and readable way to print stuff during development.") (lambda* (#:key inputs #:allow-other-keys) (setenv "TZ" "UTC") (setenv "TZDIR" - (string-append (assoc-ref inputs "tzdata") - "/share/zoneinfo")) - #t))))) + (search-input-directory inputs + "share/zoneinfo"))))))) (home-page "https://github.com/scrapinghub/dateparser") (synopsis "Date parsing library designed to parse dates from HTML pages") @@ -25045,7 +24914,7 @@ By default it uses the open Python vulnerability database Safety DB.") (propagated-inputs `(("wheel" ,python-wheel))) (native-inputs - `(("texlive" ,(texlive-union (list texlive-amsfonts/patched + `(("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts texlive-fonts-ec texlive-latex-hyperref texlive-latex-oberdiek @@ -25060,8 +24929,6 @@ By default it uses the open Python vulnerability database Safety DB.") (substitute* "tests.py" (("test_basic_conversion_from_http_url") "skip_test_basic_conversion_from_http_url")) - ;; Needed by texlive-union to generate fonts - (setenv "HOME" "/tmp") #t))))) (home-page "https://github.com/bebraw/pypandoc") (synopsis "Python wrapper for pandoc") |