diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 92 |
1 files changed, 36 insertions, 56 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 13f177c399..d17061205f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015-2023 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015-2024 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Vicente Vera Parra <vicentemvp@gmail.com> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2017, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> @@ -115,7 +115,7 @@ (define-public pspp (package (name "pspp") - (version "1.4.1") + (version "2.0.0") (source (origin (method url-fetch) @@ -123,11 +123,16 @@ version ".tar.gz")) (sha256 (base32 - "0lqrash677b09zxdlxp89z6k02y4i23mbqg83956dwl69wc53dan")))) + "1pyqlab9kw65wxc8pilcwb64l18w37xxdg3r6n287c7mda4cpxm8")))) (build-system gnu-build-system) (arguments (list #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'patch-test-suite + (lambda _ + (substitute* "tests/output/tex.at" + (("AT_CHECK\\(\\[LC_ALL=C.UTF-8 pspp") + "AT_CHECK([LC_ALL=en_US.UTF-8 pspp")))) (add-before 'check 'prepare-tests ;; Prevent irrelevant errors that cause test output mismatches: ;; ‘Fontconfig error: No writable cache directories’ @@ -149,7 +154,7 @@ `(,glib "bin") ;for glib-genmarshal perl pkg-config - python-2 ;for tests + python-3 ;for tests texinfo)) (home-page "https://www.gnu.org/software/pspp/") (synopsis "Statistical analysis") @@ -509,14 +514,14 @@ available, greatly increasing its breadth and scope.") (define-public r-boot (package (name "r-boot") - (version "1.3-28.1") + (version "1.3-30") (source (origin (method url-fetch) (uri (cran-uri "boot" version)) (sha256 (base32 - "0lzz08fpn80qzm197s4806hr6skanr3r3rlx6bx7zk4cripygkfl")))) + "15zysf5manfsap7x0zvjzgdvs9whv137iasjydp1php6sqmxc2am")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/boot") (synopsis "Bootstrap functions for R") @@ -998,19 +1003,20 @@ OpenSSL should be used.") (define-public r-estimability (package (name "r-estimability") - (version "1.4.1") + (version "1.5") (source (origin (method url-fetch) (uri (cran-uri "estimability" version)) (sha256 (base32 - "090i1xwdp4fwj8jr8nk13w49516lfkk5mq1w7l0lff9g8lgaynn6")))) + "0s6w8vnq0jc136d2mpf6pgg45rbxccrlsgdy89pgksnbaxhmyb5k")))) (build-system r-build-system) + (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/estimability") (synopsis "Tools for assessing estimability of linear predictions") - (description "Provides tools for determining estimability of linear -functions of regression coefficients, and @code{epredict} methods that handle -non-estimable cases correctly.") + (description "This package provides tools for determining estimability of +linear functions of regression coefficients, and @code{epredict} methods that +handle non-estimable cases correctly.") (license license:gpl2+))) (define-public r-labeling @@ -1258,13 +1264,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.4.4") + (version "3.5.0") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "0iiywrzv8j0npasvzgkxwhw0zqisf4xmpx06jl0lsq1ybl3fqxid")))) + (base32 "1qlh231dwsa7j0pzlw6xdm68d7r0v64916p66bg9lh1dw3a1ryh7")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -1296,13 +1302,13 @@ aesthetic attributes.") (define-public r-ggdendro (package (name "r-ggdendro") - (version "0.1.23") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "ggdendro" version)) (sha256 (base32 - "1f4fz9llmbpb8gh90aid7dvriadx16xdhsl7832yw4pyqj4fjcrs")))) + "0sdayyzvhkbli0ha68mc0f7cgp36njv9ign37d63l21hvd6w6h0r")))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-mass)) @@ -1322,14 +1328,14 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.3.5") + (version "0.3.6") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "155qa55wr9vf2j2j4qjqqlkdaqlvvlvsm2wmysnhli47bfh6vd4c")))) + "1d1sidm2qi1nrp1hhf010xji66aj8sn833fv4a39gli2c560p4i6")))) (build-system r-build-system) (native-inputs (list pkg-config)) @@ -3824,13 +3830,13 @@ using the multicore functionality of the parallel package.") "datatables-extensions/Buttons")))) (package (name "r-dt") - (version "0.31") + (version "0.32") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "11wwd76x1bk9aswi8w4bmvbf51j8hlmb5gsyqzfjdi6ihjkl4vwm")) + "0nvj2bc441b9h13085fa7q281f86lgx4k0d8lr64xgdpbmbvkl21")) (modules '((guix build utils) (ice-9 match))) (snippet @@ -4988,14 +4994,14 @@ conversion of R objects to LaTeX code, and recoding variables.") (define-public r-runit (package (name "r-runit") - (version "0.4.32") + (version "0.4.33") (source (origin (method url-fetch) (uri (cran-uri "RUnit" version)) (sha256 (base32 - "1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3")))) + "0pybwvd57vf71vvlxdrynw5n6s5gnbqnwvq0qpd395ggqypwb95j")))) (properties `((upstream-name . "RUnit"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/RUnit") @@ -5613,14 +5619,14 @@ models, generalized linear models and model-based clustering.") (define-public r-mclust (package (name "r-mclust") - (version "6.0.1") + (version "6.1") (source (origin (method url-fetch) (uri (cran-uri "mclust" version)) (sha256 (base32 - "0zsk89r2l73zi1dy0195k84n4dqdp97yisll5kg16amxs5pxx4hf")))) + "0mchdxkc3y0v6dw8fzjnlqd6f3zrafm3xf1c53s6ps529b66kx2x")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) @@ -6807,8 +6813,8 @@ Java package that provides routines for various statistical distributions.") (license license:gpl2+))) (define-public emacs-ess - (let ((commit "3691ecc642eab5d016887e42699648e0eeeef566") - (version "18.10.2") + (let ((commit "ab2faeca1ba6c456333312c58f58ef9e5ef4aa8b") + (version "24.01.1") (revision "1")) (package (name "emacs-ess") @@ -6820,7 +6826,7 @@ Java package that provides routines for various statistical distributions.") (url "https://github.com/emacs-ess/ESS") (commit commit))) (sha256 - (base32 "19p8djsbgvahpsx1w8i6h3qvpbdr4isjwm3wi82yk2648ri0qsq1")) + (base32 "0jfdfqpa3x1zm65cllkzhqir057xd3hxi4z2ddii1i26zy56iikf")) (file-name (git-file-name name version)) (modules '((guix build utils))) (snippet @@ -6838,9 +6844,6 @@ Java package that provides routines for various statistical distributions.") ;; Stop install-info from trying to update the info directory. (substitute* "doc/Makefile" ((".*/dir.*") "")) - ;; Fix r-help-mode test. - (substitute* "test/ess-test-r.el" - (("\\(equal ess-help-object \"plot.default\")") "t")) ;; Avoid generating ess-autoloads.el twice. (substitute* "Makefile" (("all: lisp doc etc autoloads") @@ -6870,9 +6873,6 @@ Java package that provides routines for various statistical distributions.") #~(modify-phases %standard-phases (delete 'configure) (add-before 'check 'skip-failing-tests - ;; The command-without-trailing-newline-test and other - ;; tests fail for unknown reasons (see: - ;; https://github.com/emacs-ess/ESS/issues/1272). (lambda _ (let-syntax ((disable-tests @@ -6884,22 +6884,7 @@ Java package that provides routines for various statistical distributions.") (((string-append "^\\(ert-deftest " test-name ".*") all) (string-append all "(skip-unless nil)\n")) - ...)))) - (disable-etests ;different test syntax - (syntax-rules () - ((_ file ()) - (syntax-error "test names list must not be empty")) - ((_ file (test-name ...)) - (emacs-batch-edit-file file - '(progn - (mapc (lambda (test) - (goto-char (point-min)) - (search-forward - (format "etest-deftest %s " test)) - (beginning-of-line) - (kill-sexp)) - (list test-name ...)) - (basic-save-buffer))))))) + ...))))) (disable-tests (list "test/ess-test-inf.el" "test/ess-test-r.el") ("ess--derive-connection-path" @@ -6909,15 +6894,10 @@ Java package that provides routines for various statistical distributions.") "ess-r-load-ESSR-github-fetch-no" "ess-r-load-ESSR-github-fetch-yes" "ess-set-working-directory-test" - "ess-test-r-startup-directory")) - (disable-etests "test/ess-test-r-eval.el" - ("ess-r-eval-ns-env-roxy-tracebug-test" - "ess-r-eval-sink-freeze-test")) - (disable-etests - "test/ess-test-inf.el" - ("command-without-trailing-newline-test"))))) + "ess-test-r-startup-directory"))))) (replace 'check - (lambda _ (invoke "make" "test"))))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? (invoke "make" "test")))))))) (native-inputs (list perl r-roxygen2 texinfo)) (inputs (list emacs-minimal r-minimal)) (propagated-inputs (list emacs-julia-mode)) |