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-rw-r--r--gnu/packages/bioconductor.scm15
1 files changed, 13 insertions, 2 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 71b04e8066..d4d7147a69 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -16736,16 +16736,27 @@ cellular organization in health and disease.")
(define-public r-bgmix
(package
(name "r-bgmix")
- (version "1.58.0")
+ (version "1.59.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BGmix" version))
(sha256
(base32
- "0r4cxrjvf3qr5514lsw1s53h4by3djb9ipkz7bi979w343dn9xfx"))))
+ "16fzgxcy4sk0kd67vzdxqz81s84dvh4bqss9cbl9bn6vhpfsnfyf"))))
(properties `((upstream-name . "BGmix")))
(build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ '(modify-phases %standard-phases
+ ;; GCC's c++/bits/specfun.h (included by cmath) provides a std::beta
+ ;; procedure.
+ (add-after 'unpack 'avoid-naming-conflict
+ (lambda _
+ (substitute* "src/BGmix_main.cpp"
+ (("\\bbeta\\b") "::beta")
+ (("\\*\\*::beta,") "**beta,")))))))
(propagated-inputs
(list r-kernsmooth))
(home-page "https://bioconductor.org/packages/BGmix/")