diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 62 |
1 files changed, 62 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f3419900f5..55cfc9facf 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9980,6 +9980,68 @@ data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.") (license license:gpl2+))) +(define-public r-protgear + (package + (name "r-protgear") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "protGear" version)) + (sha256 + (base32 "0r8md32vxjzarjldr9vsh3k0ms4zgqm9c7pp2flanbyinnqlfnxv")))) + (properties `((upstream-name . "protGear"))) + (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + ;; Needed by styler for writing to caches. + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) + (propagated-inputs (list r-biobase + r-data-table + r-dplyr + r-factoextra + r-factominer + r-flexdashboard + r-genefilter + r-ggally + r-ggplot2 + r-ggpubr + r-gtools + r-htmltools + r-kendall + r-knitr + r-limma + r-magrittr + r-mass + r-pheatmap + r-plotly + r-plyr + r-purrr + r-readr + r-remotes + r-rlang + r-rmarkdown + r-shiny + r-shinydashboard + r-styler + r-tibble + r-tidyr + r-vsn)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/Keniajin/protGear") + (synopsis + "Protein micro array data management and interactive visualization") + (description + "This package provides a generic three-step pre-processing package for +protein microarray data. This package contains different data pre-processing +procedures to allow comparison of their performance. These steps are +background correction, the coefficient of variation (CV) based filtering, +batch correction and normalization.") + (license license:gpl3))) + (define-public r-protgenerics (package (name "r-protgenerics") |