diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 12 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 13 |
2 files changed, 1 insertions, 24 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 5f524f310c..5a3d638434 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1726,8 +1726,6 @@ signal in the input, that lead to spurious peaks during peak calling.") "0irhqsi6rrkrkc7dhwmfpqfd0mnigs17027czcx8vgbrbra4lcvd")))) (properties `((upstream-name . "DiffBind"))) (build-system r-build-system) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-amap" ,r-amap) ("r-apeglm" ,r-apeglm) @@ -5664,8 +5662,6 @@ index.") "032m01q34nnmvbhcb2g3pz2fqmgcw5464m74m1m0h7x9bl04a5k8")))) (properties `((upstream-name . "QuasR"))) (build-system r-build-system) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) ("r-biobase" ,r-biobase) @@ -6049,8 +6045,6 @@ cluster count and membership by stability evidence in unsupervised analysis.") (("\\(RHDF5_LIBS\\)" match) (string-append match "/libhdf5.a"))) #t))))) - (inputs - `(("zlib" ,zlib))) (native-inputs `(("r-knitr" ,r-knitr) ("pkg-config" ,pkg-config))) @@ -6150,8 +6144,6 @@ change point detection.") (("\\(RHDF5_LIBS\\)" match) (string-append match "/libhdf5.a"))) #t))))) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-bh" ,r-bh) ("r-biobase" ,r-biobase) @@ -6332,8 +6324,6 @@ for other R packages to compile and link against.") (("\\{h5lib\\}" match) (string-append match "/libhdf5.a"))) #t))))) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-aws-s3" ,r-aws-s3) ("r-aws-signature" ,r-aws-signature) @@ -6997,8 +6987,6 @@ with multiple R processes supported by the package @code{parallel}.") `(("r-biostrings" ,r-biostrings) ("r-genomicranges" ,r-genomicranges) ("r-rhtslib" ,r-rhtslib))) - (inputs - `(("zlib" ,zlib))) ; This comes from rhtslib. (home-page "https://bioconductor.org/packages/seqbias/") (synopsis "Estimation of per-position bias in high-throughput sequencing data") (description diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9cf5c0acab..9edf75a82c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7980,8 +7980,6 @@ CAGE.") "1sl0l6v05lfglj281nszma0h5k234md7rn2pdah8vs2d4iq3kimw")))) (properties `((upstream-name . "VariantAnnotation"))) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) ("r-biobase" ,r-biobase) @@ -8260,8 +8258,6 @@ biological sequences or sets of sequences.") (substitute* "NAMESPACE" (("import\\(zlibbioc\\)") "")) #t))))) - (inputs - `(("zlib" ,zlib))) (propagated-inputs `(("r-biocgenerics" ,r-biocgenerics) ("r-biocparallel" ,r-biocparallel) @@ -8794,9 +8790,8 @@ secondary structure and comparative analysis in R.") (arguments '(#:configure-flags '("--no-staged-install"))) (propagated-inputs `(("curl" ,curl) + ("zlib" ,zlib) ; packages using rhtslib need to link with zlib ("r-zlibbioc" ,r-zlibbioc))) - (inputs - `(("zlib" ,zlib))) (native-inputs `(("pkg-config" ,pkg-config) ("r-knitr" ,r-knitr))) @@ -8827,8 +8822,6 @@ of other R packages who wish to make use of HTSlib.") ("r-rcpp" ,r-rcpp) ("r-rhtslib" ,r-rhtslib) ("r-zlibbioc" ,r-zlibbioc))) - (inputs - `(("zlib" ,zlib))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://bioconductor.org/packages/bamsignals") @@ -9127,8 +9120,6 @@ HDF5 datasets.") (propagated-inputs `(("r-rhdf5filters" ,r-rhdf5filters) ("r-rhdf5lib" ,r-rhdf5lib))) - (inputs - `(("zlib" ,zlib))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://bioconductor.org/packages/rhdf5") @@ -9616,8 +9607,6 @@ number detection tools.") ("r-zlibbioc" ,r-zlibbioc))) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes - (inputs - `(("zlib" ,zlib))) (home-page "https://github.com/al2na/methylKit") (synopsis "DNA methylation analysis from high-throughput bisulfite sequencing results") |