diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 12 insertions, 21 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f60fc4c84c..7f865ae878 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1887,42 +1887,33 @@ other types of unwanted sequence from high-throughput sequencing reads.") (define-public libbigwig (package (name "libbigwig") - (version "0.1.4") + (version "0.4.2") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/dpryan79/libBigWig/" - "archive/" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/dpryan79/libBigWig.git") + (commit version))) + (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "098rjh35pi4a9q83n8wiwvyzykjqj6l8q189p1xgfw4ghywdlvw1")))) + "0h2smg24v5srdcqzrmz2g23cmlp4va465mgx8r2z571sfz8pv454")))) (build-system gnu-build-system) (arguments `(#:test-target "test" + #:tests? #f ; tests require access to the web #:make-flags (list "CC=gcc" (string-append "prefix=" (assoc-ref %outputs "out"))) #:phases (modify-phases %standard-phases - (delete 'configure) - (add-before 'check 'disable-curl-test - (lambda _ - (substitute* "Makefile" - (("./test/testRemote.*") "")) - #t)) - ;; This has been fixed with the upstream commit 4ff6959cd8a0, but - ;; there has not yet been a release containing this change. - (add-before 'install 'create-target-dirs - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (mkdir-p (string-append out "/lib")) - (mkdir-p (string-append out "/include")) - #t)))))) + (delete 'configure)))) (inputs `(("zlib" ,zlib) ("curl" ,curl))) (native-inputs - `(("doxygen" ,doxygen))) + `(("doxygen" ,doxygen) + ;; Need for tests + ("python" ,python-2))) (home-page "https://github.com/dpryan79/libBigWig") (synopsis "C library for handling bigWig files") (description |