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-rw-r--r--gnu/packages/bioinformatics.scm11
1 files changed, 7 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6488642df8..e01022e77a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14,6 +14,7 @@
;;; Copyright © 2018, 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
+;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -13289,21 +13290,23 @@ million cells.")
(define-public python-bbknn
(package
(name "python-bbknn")
- (version "1.3.1")
+ (version "1.3.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "bbknn" version))
(sha256
(base32
- "1qgdganvj3lyxj84v7alm23b9vqhwpn8z0115qndpnpy90qxynwz"))))
+ "1jbsh01f57zj4bhvjr3jh4532zznqd6nccmgrl3qi9gnhkf7c4y0"))))
(build-system python-build-system)
+ (arguments
+ `(#:tests? #f)) ; TODO: Enable after migration to scikit-learn.
(propagated-inputs
`(("python-annoy" ,python-annoy)
("python-cython" ,python-cython)
- ("python-faiss" ,python-faiss)
("python-numpy" ,python-numpy)
- ("python-scanpy" ,python-scanpy)))
+ ("python-scipy" ,python-scipy)
+ ("python-umap-learn" ,python-umap-learn)))
(home-page "https://github.com/Teichlab/bbknn")
(synopsis "Batch balanced KNN")
(description "BBKNN is a batch effect removal tool that can be directly