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Diffstat (limited to 'guix/build/r-build-system.scm')
-rw-r--r-- | guix/build/r-build-system.scm | 112 |
1 files changed, 112 insertions, 0 deletions
diff --git a/guix/build/r-build-system.scm b/guix/build/r-build-system.scm new file mode 100644 index 0000000000..3fc13eb835 --- /dev/null +++ b/guix/build/r-build-system.scm @@ -0,0 +1,112 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (guix build r-build-system) + #:use-module ((guix build gnu-build-system) #:prefix gnu:) + #:use-module (guix build utils) + #:use-module (ice-9 match) + #:use-module (ice-9 ftw) + #:use-module (ice-9 popen) + #:use-module (srfi srfi-1) + #:use-module (srfi srfi-26) + #:export (%standard-phases + r-build)) + +;; Commentary: +;; +;; Builder-side code of the standard build procedure for R packages. +;; +;; Code: + +(define (invoke-r command params) + (zero? (apply system* "R" "CMD" command params))) + +(define (pipe-to-r command params) + (let ((port (apply open-pipe* OPEN_WRITE "R" params))) + (display command port) + (zero? (status:exit-val (close-pipe port))))) + +(define (generate-site-path inputs) + (string-join (map (match-lambda + ((_ . path) + (string-append path "/site-library"))) + ;; Restrict to inputs beginning with "r-". + (filter (match-lambda + ((name . _) + (string-prefix? "r-" name))) + inputs)) + ":")) + +(define* (check #:key test-target inputs outputs tests? #:allow-other-keys) + "Run the test suite of a given R package." + (let* ((libdir (string-append (assoc-ref outputs "out") "/site-library/")) + + ;; R package names are case-sensitive and cannot be derived from the + ;; Guix package name. The exact package name is required as an + ;; argument to ‘tools::testInstalledPackage’, which runs the tests + ;; for a package given its name and the path to the “library” (a + ;; location for a collection of R packages) containing it. + + ;; Since there can only be one R package in any collection (= + ;; “library”), the name of the only directory in the collection path + ;; is the original name of the R package. + (pkg-name (car (scandir libdir (negate (cut member <> '("." "..")))))) + (testdir (string-append libdir pkg-name "/" test-target)) + (site-path (string-append libdir ":" (generate-site-path inputs)))) + (if (and tests? (file-exists? testdir)) + (begin + (setenv "R_LIBS_SITE" site-path) + (pipe-to-r (string-append "tools::testInstalledPackage(\"" pkg-name "\", " + "lib.loc = \"" libdir "\")") + '("--no-save" "--slave"))) + #t))) + +(define* (install #:key outputs inputs (configure-flags '()) + #:allow-other-keys) + "Install a given R package." + (let* ((out (assoc-ref outputs "out")) + (site-library (string-append out "/site-library/")) + (params (append configure-flags + (list "--install-tests" + (string-append "--library=" site-library) + "."))) + (site-path (string-append site-library ":" + (generate-site-path inputs)))) + ;; If dependencies cannot be found at install time, R will refuse to + ;; install the package. + (setenv "R_LIBS_SITE" site-path) + ;; Some R packages contain a configure script for which the CONFIG_SHELL + ;; variable should be set. + (setenv "CONFIG_SHELL" (which "bash")) + (mkdir-p site-library) + (invoke-r "INSTALL" params))) + +(define %standard-phases + (modify-phases gnu:%standard-phases + (delete 'configure) + (delete 'build) + (delete 'check) ; tests must be run after installation + (replace 'install install) + (add-after 'install 'check check))) + +(define* (r-build #:key inputs (phases %standard-phases) + #:allow-other-keys #:rest args) + "Build the given R package, applying all of PHASES in order." + (apply gnu:gnu-build #:inputs inputs #:phases phases args)) + +;;; r-build-system.scm ends here |