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2020-12-15system: 'init' does not recompute the hash of each store item.Ludovic Courtès
Fixes <https://bugs.gnu.org/44760>. Previously, the 'register-path' call would re-traverse ITEM to compute its nar hash, even though that hash is already known in the initial store. This patch also avoids repeated opening/closing of the database. * guix/store/database.scm (call-with-database): Export. * guix/scripts/system.scm (copy-item): Add 'db' parameter. Call 'sqlite-register' instead of 'register-path'. (copy-closure): Remove redundant call to 'references*'. Call 'call-with-database' and pass the database to 'copy-item'.
2020-11-17Merge remote-tracking branch 'origin/version-1.2.0' into masterMaxim Cournoyer
Conflicts: gnu/packages/bioinformatics.scm The python-pysam package fixed in master was kept instead of the update done in the version-1.2.0 branch.
2020-11-16.dir-locals.el: Add upstream report link.Miguel Ángel Arruga Vivas
Follow up from 1d6e7732b163c9e945c9e5b32c726fe3b5f09c3a. * .dir-locals.el: Modify comment to point at the report to bug-gnu-emacs.
2020-11-16.dir-locals.el: Use setq-local on guix-directory.Christopher Lemmer Webber
* .dir-locals.el: Use setq-local on guix-directory. While a problem with using setq hasn't been identified, this seems like good hygiene.
2020-11-16.dir-locals.el: Prevent errors if .dir-locals.el isn't found.Christopher Lemmer Webber
While this repo should presumably always have a .dir-locals.el by the nature of this file itself, it seems that this behavior "leaks". See added comment for more details on the fix to this strange bug, which is likely an upstream emacs or vc-mode issue. Thanks to Miguel Ángel Arruga Vivas and Maxim Cournoyer for helping investigate this problem. * .dir-locals.el: Don't error out if .dir-locals.el isn't found.
2020-11-12maint: update-guix-package: Optionally add sources to store.Maxim Cournoyer
Following discussions in <https://issues.guix.gnu.org/43893>, keeping a copy of the updated package source is desirable when generating a release. * build-aux/update-guix-package.scm (version-controlled?): Remove variable. (call-with-temporary-git-worktree): Renamed from 'with-temporary-git-worktree'. Update doc. Do not change directory implicitly. Define as a procedure, not a syntax. (keep-source-in-store): New procedure. (main): Adjust to use with call-with-temporary-git-worktree. Add the sources to the store when GUIX_ALLOW_ME_TO_USE_PRIVATE_COMMIT is set. Exit gracefully when FIND-ORIGIN-REMOTE returns #f. (%savannah-guix-git-repo-push-url-regexp): Adjust match for a potential colon separator. * Makefile.am (GUIX_ALLOW_ME_TO_USE_PRIVATE_COMMIT): Adjust. * .dir-locals.el (scheme-mode): Remove entry for with-temporary-git-worktree. * doc/contributing.texi (Updating the Guix Package): Update doc. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-11-01.dir-locals.el: Require cl-lib at runtime.Miguel Ángel Arruga Vivas
* .dir-locals.el (nil)<Geiser>: Load cl-lib when needed.
2020-10-31.dir-locals.el: Automatically set the GEISER-GUILE-LOAD-PATH variable.Maxim Cournoyer
Thanks to Miguel Ángel Arruga Vivas and Pierre Neidhardt for their suggestions and improvements. * .dir-locals.el: Set the GUIX-DIRECTORY and GEISER-GUILE-LOAD-PATH Emacs variables based on the location of the .dir-locals file.
2020-10-19maint: update-guix-package: Prevent accidentally breaking guix pull.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/43893>. This changes the 'update-guix-package' tool so that it: 1. Always uses a clean checkout to compute the hash of the updated 'guix' package. 2. Ensures the commit used in the updated 'guix' package definition has already been pushed upstream. * build-aux/update-guix-package.scm (%savannah-guix-git-repo-push-url): New variable. (with-input-pipe-to-string, with-temporary-git-worktree): New syntaxes. (find-origin-remote, git-add-worktree): New procedures. (commit-already-pushed?): New predicate. (main): Check the commit used has already been pushed upstream and compute the hash from a clean checkout. * doc/contributing.texi (Updating the Guix Package): Document it. * .dir-locals.el (scheme-mode): Fix indentation of with-temporary-git-worktree.
2020-09-14deduplication: pass store directory to replace-with-link.Caleb Ristvedt
This causes with-writable-file to take into consideration the actual store being used, as passed to 'deduplicate', rather than whatever (%store-directory) may return. * guix/store/deduplication.scm (replace-with-link): new keyword argument 'store'. Pass to with-writable-file. (with-writable-file, call-with-writable-file): new store argument. (deduplicate): pass store to replace-with-link. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14.dir-locals.el: fix call-with-{retrying-}transaction indenting.Caleb Ristvedt
* .dir-locals.el (call-with-transaction, call-with-retrying-transaction): change scheme-indent-function property from 2 to 1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-08-26.dir-locals.el: Add indentation rule for 'package/inherit'.Ludovic Courtès
* .dir-locals.el (scheme-mode): Add 'package/inherit'.
2020-06-25deduplication: Use 'dynamic-wind' when changing permissions of the parent.Ludovic Courtès
Suggested by Caleb Ristvedt <caleb.ristvedt@cune.org>. * guix/store/deduplication.scm (call-with-writable-file): New procedure. (with-writable-file): New macro. (replace-with-link): Use it.
2020-06-16channels: 'latest-channel-instance' authenticates Git checkouts.Ludovic Courtès
Fixes <https://bugs.gnu.org/22883>. * guix/channels.scm (<channel>)[introduction]: New field. (<channel-introduction>): New record type. (%guix-channel-introduction): New variable. (%default-channels): Use it. (<channel-metadata>)[keyring-reference]: New field. (%default-keyring-reference): New variable. (read-channel-metadata, read-channel-metadata-from-source): Initialize the 'keyring-reference' field. (commit-short-id, verify-introductory-commit) (authenticate-channel): New procedures. (latest-channel-instance): Call 'authenticate-channel' when CHANNEL has an introduction. * tests/channels.scm (gpg+git-available?, commit-id-string): New procedures. ("authenticate-channel, wrong first commit signer"): ("authenticate-channel, .guix-authorizations"): New tests. * doc/guix.texi (Invoking guix pull): Mention authentication.
2020-06-10database: separate transaction-handling and retry-handling.Caleb Ristvedt
Previously call-with-transaction would both retry when SQLITE_BUSY errors were thrown and do what its name suggested (start and rollback/commit a transaction). This changes it to do only what its name implies, which simplifies its implementation. Retrying is provided by the new call-with-SQLITE_BUSY-retrying procedure. * guix/store/database.scm (call-with-transaction): no longer restarts, new #:restartable? argument controls whether "begin" or "begin immediate" is used. (call-with-SQLITE_BUSY-retrying, call-with-retrying-transaction, call-with-retrying-savepoint): new procedures. (register-items): use call-with-retrying-transaction to preserve old behavior. * .dir-locals.el (call-with-retrying-transaction, call-with-retrying-savepoint): add indentation information.
2020-06-10database: ensure update-or-insert is run within a transactionCaleb Ristvedt
update-or-insert can break if an insert occurs between when it decides whether to update or insert and when it actually performs that operation. Putting the check and the update/insert operation in the same transaction ensures that the update/insert will only succeed if no other write has occurred in the middle. * guix/store/database.scm (call-with-savepoint): new procedure. (update-or-insert): use call-with-savepoint to ensure the read and the insert/update occur within the same transaction.
2020-06-10database: rewrite query procedures in terms of with-statement.Caleb Ristvedt
Most of our queries would fail to finalize their statements properly if sqlite returned an error during their execution. This resolves that, and also makes them somewhat more concise as a side-effect. This also makes some small changes to improve certain queries where behavior was strange or overly verbose. * guix/store/database.scm (call-with-statement): new procedure. (with-statement): new macro. (last-insert-row-id, path-id, update-or-insert, add-references): rewrite to use with-statement. (update-or-insert): factor last-insert-row-id out of the end of both branches. (add-references): remove pointless last-insert-row-id call. * .dir-locals.el (with-statement): add indenting information.
2020-06-06ui: 'display-search-results' automatically invokes the pager.Ludovic Courtès
* guix/ui.scm (call-with-paginated-output-port): New procedure. (with-paginated-output-port): New macro. (display-search-results): Use it instead of displaying a hint.
2020-06-05git-authenticate: Add tests.Ludovic Courtès
* guix/tests/git.scm (call-with-environment-variables) (with-environment-variables): Remove. * guix/tests/git.scm (populate-git-repository): Add clauses for signed commits and signed merges. * guix/tests/gnupg.scm: New file. * tests/git-authenticate.scm: New file. * tests/ed25519bis.key, tests/ed25519bis.sec: New files. * Makefile.am (dist_noinst_DATA): Add 'guix/tests/gnupg.scm'. (SCM_TESTS): Add 'tests/git-authenticate.scm'. (EXTRA_DIST): Add tests/ed25519bis.{key,sec}.
2020-05-16gexp: Add 'let-system'.Ludovic Courtès
* guix/gexp.scm (<system-binding>): New record type. (let-system): New macro. (system-binding-compiler): New procedure. (default-expander): Add 'self-quoting?' case. (self-quoting?): New procedure. (lower-inputs): Add 'filterm'. Pass the result of 'mapm/accumulate-builds' through FILTERM. (gexp->sexp)[self-quoting?]: Remove. * tests/gexp.scm ("let-system", "let-system, target") ("let-system, ungexp-native, target") ("let-system, nested"): New tests. * doc/guix.texi (G-Expressions): Document it.
2020-03-22store: Add 'with-build-handler'.Ludovic Courtès
* guix/store.scm (current-build-prompt): New variable. (call-with-build-handler, invoke-build-handler): New procedures. (with-build-handler): New macro. * tests/store.scm ("with-build-handler"): New test.
2020-03-12gexp: Add 'with-parameters'.Ludovic Courtès
* guix/gexp.scm (<parameterized>): New record type. (with-parameters): New macro. (compile-parameterized): New gexp compiler. * tests/gexp.scm ("with-parameters for %current-system") ("with-parameters for %current-target-system") ("with-parameters + file-append"): New tests. * doc/guix.texi (G-Expressions): Document it.
2019-11-29ui: Factorize 'with-profile-lock'.Ludovic Courtès
* guix/ui.scm (profile-lock-handler, profile-lock-file): New procedures. (with-profile-lock): New macro. * guix/scripts/package.scm (process-actions): Use 'with-profile-lock' instead of 'with-file-lock/no-wait'. * guix/scripts/pull.scm (guix-pull): Likewise.
2019-11-19pull: Acquire a lock for the target profile.Ludovic Courtès
This is a followup to b1fb663404894268b5ee92c040f12c52c0bee425. * guix/scripts/pull.scm (guix-pull): Wrap 'run-with-store' call in 'with-file-lock/no-wait'.
2019-09-23git: Add 'commit-difference'.Ludovic Courtès
* guix/git.scm (commit-closure, commit-difference): New procedures. * guix/tests/git.scm, tests/git.scm: New files. * Makefile.am (dist_noinst_DATA): Add guix/tests/git.scm. (SCM_TESTS): Add tests/git.scm.
2019-06-05syscalls: Add 'with-file-lock' macro.Ludovic Courtès
* guix/scripts/offload.scm (lock-file, unlock-file, with-file-lock): Move to... * guix/build/syscalls.scm: ... here.
2019-05-27publish: Add support for lzip.Ludovic Courtès
* guix/scripts/publish.scm (show-help, %options): Support '-C METHOD' and '-C METHOD:LEVEL'. (default-compression): New procedure. (bake-narinfo+nar): Add lzip. (nar-response-port): Likewise. (string->compression-type): New procedure. (make-request-handler): Generalize /nar/gzip handler to handle /nar/lzip as well. * tests/publish.scm ("/nar/lzip/*"): New test. ("/*.narinfo with lzip compression"): New test. * doc/guix.texi (Invoking guix publish): Document it. (Requirements): Mention lzlib.
2019-03-07database: Make 'register-items' transactional.Caleb Ristvedt
* guix/store/database.scm (SQLITE_BUSY, register-output-sql): New variables. (add-references): Don't try finalizing after each use, only after all the uses (otherwise a finalized statement would be used if #:cache? was #f). (call-with-transaction): New procedure. (register-items): Use call-with-transaction to prevent broken intermediate states from being visible. * .dir-locals.el (call-with-transaction): indent it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-11status: Add 'with-status-verbosity'.Ludovic Courtès
* guix/status.scm (logger-for-level, call-with-status-verbosity): New procedures. (with-status-verbosity): New macro. * guix/scripts/environment.scm (guix-environment): Use 'with-status-verbosity' instead of 'with-status-report'. * guix/scripts/pack.scm (guix-pack): Likewise. * guix/scripts/package.scm (guix-package): Likewise. * guix/scripts/pull.scm (guix-pull): Likewise. * guix/scripts/system.scm (guix-system): Likewise. * build-aux/run-system-tests.scm (run-system-tests): Likewise.
2018-10-19tests: Run 'guix pack' tests using the external store.Ludovic Courtès
Fixes <https://bugs.gnu.org/32184>. * guix/tests.scm (call-with-external-store): New procedure. (with-external-store): New macro. * tests/pack.scm (%store): Remove. (test-assertm): Add 'store' parameter. ("self-contained-tarball"): Wrap in 'with-external-store'. * tests/guix-pack.sh: Connect to the external store, if possible, by setting NIX_STORE_DIR and GUIX_DAEMON_SOCKET. Remove most uses of '--bootstrap'.
2018-09-27Add (guix status) and use it for pretty colored output.Ludovic Courtès
* guix/progress.scm (progress-reporter/trace): New procedure. (%progress-interval): New variable. (progress-reporter/file): Use it. * guix/scripts/build.scm (set-build-options-from-command-line): Pass #:print-extended-build-trace?. (%default-options): Add 'print-extended-build-trace?'. (guix-build): Parameterize CURRENT-TERMINAL-COLUMNS. Use 'build-status-updater'. * guix/scripts/environment.scm (%default-options): Add 'print-extended-build-trace?'. (guix-environment): Wrap body in 'with-status-report'. * guix/scripts/pack.scm (%default-options): Add 'print-build-trace?' and 'print-extended-build-trace?'. (guix-pack): Wrap body in 'with-status-report'. * guix/scripts/package.scm (%default-options, guix-package): Likewise. * guix/scripts/system.scm (%default-options, guix-system): Likewise. * guix/scripts/pull.scm (%default-options, guix-pull): Likewise. * guix/scripts/substitute.scm (progress-report-port): Don't call STOP when TOTAL is zero. (process-substitution): Add #:print-build-trace? and honor it. (guix-substitute)[print-build-trace?]: New variable. Pass #:print-build-trace? to 'process-substitution'. * guix/status.scm: New file. * guix/store.scm (set-build-options): Add #:print-extended-build-trace?; pass it into PAIRS. (%protocol-version): Bump. (protocol-version, nix-server-version): New procedures. (current-store-protocol-version): New variable. (with-store, build-things): Parameterize it. * guix/ui.scm (build-output-port): Remove. (colorize-string): Export. * po/guix/POTFILES.in: Add guix/status.scm. * tests/status.scm: New file. * Makefile.am (SCM_TESTS): Add it. * nix/libstore/worker-protocol.hh (PROTOCOL_VERSION): Bump to 0x162. * nix/libstore/build.cc (DerivationGoal::registerOutputs) (SubstitutionGoal::finished): Print a "@ hash-mismatch" trace before throwing.
2018-06-01Add (gnu store database).Caleb Ristvedt
* guix/config.scm.in (%store-database-directory): New variable. * guix/store/database.scm: New file. * tests/store-database.scm: New file. * Makefile.am (STORE_MODULES): New variable. (MODULES, MODULES_NOT_COMPILED): Adjust accordingly. (SCM_TESTS) [HAVE_GUILE_SQLITE3]: Add tests/store-database.scm. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01gexp: Add 'with-extensions'.Ludovic Courtès
* guix/gexp.scm (<gexp>)[extensions]: New field. (gexp-attribute): New procedure. (gexp-modules): Write in terms of 'gexp-attribute'. (gexp-extensions): New procedure. (gexp->derivation): Add #:effective-version. [extension-flags]: New procedure. Honor extensions of EXP. (current-imported-extensions): New syntax parameter. (with-extensions): New macro. (gexp): Honor CURRENT-IMPORTED-EXTENSIONS. (compiled-modules): Add #:extensions and honor it. (load-path-expression): Likewise. (gexp->script, gexp->file): Honor extensions. * tests/gexp.scm (%extension-package): New variable. ("gexp-extensions & ungexp") ("gexp-extensions & ungexp-splicing") ("gexp-extensions and literal Scheme object") ("gexp->derivation & with-extensions") ("program-file & with-extensions"): New tests. * doc/guix.texi (G-Expressions): Document 'with-extensions'.
2018-01-08services: guix: Add 'log-compression' option.Ludovic Courtès
* gnu/services/base.scm (<guix-configuration>)[log-compression]: New field. (guix-shepherd-service): Use 'match-record' instead of 'match'. Honor 'log-compression'. * doc/guix.texi (Base Services): Document 'log-compression'.
2017-12-01weather: Use (guix progress) for progress report.Ludovic Courtès
* guix/progress.scm (start-progress-reporter!, stop-progress-reporter!) (progress-reporter-report!): New procedures. * guix/scripts/weather.scm (call-with-progress-reporter): New procedure. (package-outputs)[update-progress!]: Remove. Use 'call-with-progress-reporter' instead. (guix-weather): Parameterize 'current-terminal-columns'.
2017-05-18union: Gracefully handle dangling symlinks in the input.Ludovic Courtès
Fixes <http://bugs.gnu.org/26949>. Reported by Pjotr Prins <pjotr.public12@thebird.nl>. * guix/build/union.scm (file-is-directory?): Return #f when FILE does not exist or is a dangling symlink. (file=?): Pass #f as a second argument to 'stat'; return #f when both ST1 or ST2 is #f. * tests/profiles.scm (test-equalm): New macro. ("union vs. dangling symlink"): New test.
2017-05-04dir-locals.el: Add 'modify-phases' keywords.Alex Kost
* .dir-locals.el: Add indentation rules for 'replace', 'add-before' and 'add-after'.
2017-04-18Add (guix workers).Ludovic Courtès
* guix/workers.scm, tests/workers.scm: New files. * Makefile.am (MODULES, SCM_TESTS): Add them. * .dir-locals.el: Add rule for 'eventually'.
2017-01-28Add (guix memoization).Ludovic Courtès
* guix/combinators.scm (memoize): Remove. * guix/memoization.scm: New file. * Makefile.am (MODULES): Add it. * gnu/packages.scm, gnu/packages/bootstrap.scm, guix/build-system/gnu.scm, guix/build-system/python.scm, guix/derivations.scm, guix/gnu-maintenance.scm, guix/import/cran.scm, guix/import/elpa.scm, guix/modules.scm, guix/scripts/build.scm, guix/scripts/graph.scm, guix/scripts/lint.scm, guix/store.scm, guix/utils.scm: Adjust imports accordingly.
2016-10-04Set Emacs config variable sentence-end-double-space.Hartmut Goebel
Users using a non-English environment may have set this to `nil´, which leads to fill-paragraph removing the second space. * .dir-locals.el: Set sentence-end-double-space to true. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-19Add (guix zlib).Ludovic Courtès
* guix/zlib.scm, tests/zlib.scm: New files. * Makefile.am (MODULES): Add guix/zlib.scm. (SCM_TESTS): Add tests/zlib.scm. * m4/guix.m4 (GUIX_LIBGCRYPT_LIBDIR): New macro. * configure.ac (LIBGCRYPT_LIBDIR): Use it. Define and substitute 'LIBZ'. * guix/config.scm.in (%libz): New variable.
2016-07-12gexp: Add 'with-imported-modules' macro.Ludovic Courtès
* guix/gexp.scm (<gexp>)[modules]: New field. (gexp-modules): New procedure. (gexp->derivation): Use it and append the result to %MODULES. Update docstring to mark #:modules as deprecated. (current-imported-modules, with-imported-modules): New macros. (gexp): Pass CURRENT-IMPORTED-MODULES as second argument to 'gexp'. (gexp->script): Use and honor 'gexp-modules'; define '%modules'. * tests/gexp.scm ("gexp->derivation & with-imported-modules") ("gexp->derivation & nested with-imported-modules") ("gexp-modules & ungexp", "gexp-modules & ungexp-splicing"): New tests. ("program-file"): Use 'with-imported-modules'. Remove #:modules argument to 'program-file'. * doc/guix.texi (G-Expressions): Document 'with-imported-modules'. Mark #:modules of 'gexp->derivation' as deprecated. * emacs/guix-devel.el: Add syntax for 'with-imported-modules'. (guix-devel-keywords): Add it. * .dir-locals.el: Likewise.
2015-10-28services: Add 'modify-services'.Ludovic Courtès
* gnu/services.scm (%modify-service, modify-services): New macros. * gnu/services/base.scm (mingetty-service-type, guix-service-type): Export. * emacs/guix-devel.el (guix-devel-keywords): Add 'modify-services'. Ditto in 'guix-devel-scheme-indent' call. * doc/guix.texi (Using the Configuration System): Give an example of 'modify-services'. (Service Reference): Document it.
2015-07-09gnu: build: Add Linux container module.David Thompson
* gnu/build/linux-container.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. * .dir-locals.el: Add Scheme indent rules for 'call-with-container', and 'container-excursion'. * tests/containers.scm: New file. * Makefile.am (SCM_TESTS): Add it.
2015-06-06store: Add 'verify-store' RPC.Ludovic Courtès
* guix/store.scm (operation-id): Add 'verify-store'. (verify-store): New procedure. (set-build-options): Adjust comment. * tests/store.scm ("verify-store", "verify-store + check-contents"): New tests.
2015-05-25ui: Auto-compile user code, and improve error reporting.Ludovic Courtès
Reported by Christian Grothoff. * guix/ui.scm (load*): Add 'frame-with-source'. Set %load-should-auto-compile. Change error handle to just (exit 1). Add pre-unwind handler to capture the stack and call 'report-load-error'. (report-load-error): Add optional 'frame' parameter and pass it to 'display-error'. * tests/guix-system.sh: Add "unbound variable" test.
2015-05-06profiles: Generate an 'etc/profile' file.Ludovic Courtès
Suggested by 宋文武 <iyzsong@gmail.com> in <http://bugs.gnu.org/20255>. * guix/build/profiles.scm (abstract-profile, write-environment-variable-definition): New procedures. (build-profile): Add #:search-paths parameter. Create OUTPUT/etc/profile. * guix/profiles.scm (profile-derivation)[builder]: Add 'search-paths' variable and pass it to 'build-profile'. Adjust #:modules argument. * tests/profiles.scm ("etc/profile"): New test. * doc/guix.texi (Invoking guix package): Mention etc/profile.
2015-02-26utils: Add 'modify-phases'.Ludovic Courtès
* guix/build/utils.scm (modify-phases): New macro.
2015-02-02Set Emacs indentation for `wrap-program'.Taylan Ulrich B
* .dir-locals.el (scheme-mode): Set `scheme-indent-function' of `wrap-program' to 1.
2015-02-02tests: Add 'with-derivation-substitute' and use it.Ludovic Courtès
* guix/tests.scm (%substitute-directory): New variable. (call-with-derivation-narinfo): Use it. (call-with-derivation-substitute): New procedure. (with-derivation-substitute): New macro. * tests/store.scm ("substitute"): Use 'with-derivation-substitute'. ("substitute, corrupt output hash"): Likewise.
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